Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5912 ATGATCTTTCTGTCTCTTTTGAGAAGTTCCAAAAAAACTATTTGTCCCGTCAAAAAAAGAAAAGAACCAAAGAAACTCGACTCTTTTGTGGCAAAAGAATTAATTATGAATGTAAGGAAACATGATATGATGCTAAGTAGTGTTCCAAAGACTTCAACAATTACAAATTCTGCTACTCCTTCAAATATGTTTCCAGAAGAACTTCAACTTCAGCTTTATCAAGCTTTCATATTCTCAATTCCTATACTATTTTCAATTATTCTCTTTCTCCTTTTTTACTTGTTTTACCTTAAGAGAAGAGCTTCCTCTTTCTCTCCACACTTACTTCCAAGGATTAATCCTCCAACTACATATCGTTATTATTCTTCTTCTTCGCCTCGCCGTTTGGATTTAACTGTGCAATTCTTGGACAAACTTCCTAGAATTTTGTTTGACGAGGATTTACAAGCAAGGGATTCAGTATGTTGTGTATGTTTGGGAGAATTTGAGGTGAAAGAAGAGTTGCTACAGATTCCATATTGCAAGCATGTGTTCCACATAGATTGCATACATCATTGGCTACAATCAAATTCCACTTGTCCACTTTGTAGATGTTCCATTATTCCCACTACAACCAAGTTCCTTAATCCAGCACCACCTATTAATATTATTATATCTGACCCACCACACCAAAGTCCTATTAATTCAGATTCTCCATTACAAATTTCATCATTGCCAAATGAATATGGTGCTTCCTCAAATATTATGACAAGGGAATGA 759 0.3478 MIFLSLLRSSKKTICPVKKRKEPKKLDSFVAKELIMNVRKHDMMLSSVPKTSTITNSATPSNMFPEELQLQLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINPPTTYRYYSSSSPRRLDLTVQFLDKLPRILFDEDLQARDSVCCVCLGEFEVKEELLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTTKFLNPAPPINIIISDPPHQSPINSDSPLQISSLPNEYGASSNIMTRE* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5912 252 MobiDBLite consensus disorder prediction 228 252 - -
Tpr2g5912 252 Pfam Ring finger domain 155 197 IPR001841 -
Tpr2g5912 252 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Tpr2g5912 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 63 213 - -
Tpr2g5912 252 SMART ring_2 155 196 IPR001841 -
Tpr2g5912 252 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 63 213 - -
Tpr2g5912 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 202 IPR013083 -
Tpr2g5912 252 SUPERFAMILY RING/U-box 133 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5912 Tpr-Chr2 70927358 70930116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5912 44 202 C3H Transcription Factor Family AT4G10150 38.365 1.62e-33 119