Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5900 ATGTTAAAGAAAAAGTCTAGTTTGGGTCGTCAAAAAATCCCTATTGAAAAAATACCTAAAAAAAGTCATTTACAAGTTACTTTTTCTAAGCGTCGTTCAGGACTTTTCAAAAAGGCCAGTGAGCTTTGCACACTATGTGGAGTGGAGATTGGAATTGTCGTTTTCTCTCCGGCTGATAAGGCATTCTCTTTTGGACATCCAGAAGTTGAATCCATCATTGATCGTTATTTGAGCCGAAACCCTCCACAAGAATCCAGTTCTAACCAAATTGTTGAGGCTCATAGAAATTCTAATGTCCGCGATCTCAACATGCAACTAACTCAACTTCTTAGCCATCTCGAGATTGAGAAAAAACAAGGGGAGGAGATAGATCATGTGAGGAAAGCTAGGCAAATGCAATTTTGGTGGGAAGGCCCTATTGATGAACTTGGCTTGAATGAATTGCTCCAACTAAAGGTTTCTATTGAGGACCTAAAGAAGAATCTTGGAAAAATTGCTAGCAAATGCATGATGGAACAATCGAACATGTCTTCACCAAATATTGGGGTTAATGGATTTGGACGTTATGATGACTTTGAGAACAAACCAGGTGTTGGGATTAATATTACTTCAACCTTTCCTAATCCCTACAATCTTGGTTTTCGACATGGATATCTTGAACACCAATTTTTTAATACGTATTTGGGTTAA 690 0.3797 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIGIVVFSPADKAFSFGHPEVESIIDRYLSRNPPQESSSNQIVEAHRNSNVRDLNMQLTQLLSHLEIEKKQGEEIDHVRKARQMQFWWEGPIDELGLNELLQLKVSIEDLKKNLGKIASKCMMEQSNMSSPNIGVNGFGRYDDFENKPGVGINITSTFPNPYNLGFRHGYLEHQFFNTYLG* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5900 229 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Tpr2g5900 229 Gene3D - 90 180 - -
Tpr2g5900 229 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Tpr2g5900 229 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Tpr2g5900 229 PANTHER MADS BOX PROTEIN 7 177 - -
Tpr2g5900 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr2g5900 229 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr2g5900 229 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr2g5900 229 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr2g5900 229 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr2g5900 229 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr2g5900 229 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5900 Tpr-Chr2 70708269 70708958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5900 7 217 Type I MADS-box Gene Family AT2G24840 47.907 1.18e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g5900 SRF-TF 1e-22 No_clan