Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5898 ATGTTAAAGAAAAAGTCTAGTTTGGGTCGTCAAAAAATTCCTATTGAAAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGCCGTTCAGGACTTTTCAAAAAGGCTAGTGAACTTTGCACACTTTGTGGGGTGGATATTGGAATTGTCGTTTTCTCTCCGGCTAATAAGGCATTCTCTTTTGGACATCCAGAAGTTGAGTCTATCATTGATCGTTATTTGAGCCGAAACCCTCCACAAGAGTCCAGTTCTAACCAAATTGTTGAGGCTCATAGAAATTCTAATGTCCGCGATCTCAACATGCAACTAACTCAACTTCTTAGCCATCTCGAGATTGAGAAAAAACAAGGGGAGGAGATAGATCATGTGAGGAAAGCTAGGCAAATGCAATTTTGGTGGGAAGGCCCTATTGATGAACTTGGCTTGAATGAATTGCTCCAACTAAAGGTTTCTATTGAGGACCTAAAGAAGAATCTTGGAAAAATTGCTAGCAAATGCATGATGGAAAAATCGAACATGTCTTCACCAAATATTGGGGTTAATCGATTTGGACGTTATGGTGCCTAG 576 0.3872 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVDIGIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESSSNQIVEAHRNSNVRDLNMQLTQLLSHLEIEKKQGEEIDHVRKARQMQFWWEGPIDELGLNELLQLKVSIEDLKKNLGKIASKCMMEKSNMSSPNIGVNRFGRYGA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5898 191 PANTHER MADS BOX PROTEIN 7 176 - -
Tpr2g5898 191 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr2g5898 191 Gene3D - 90 180 - -
Tpr2g5898 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr2g5898 191 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 176 - -
Tpr2g5898 191 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr2g5898 191 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr2g5898 191 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Tpr2g5898 191 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr2g5898 191 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr2g5898 191 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr2g5898 191 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5898 Tpr-Chr2 70699643 70700218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5898 7 162 Type I MADS-box Gene Family AT2G24840 55.346 9.70e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g5898 SRF-TF 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5898 - - cam:101493882 309.301