Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5856 ATGCAGGATAATGAATGTCAACCAGTTGAAATTGACAAGTACAAAGATATTTTTCTTGGTCAAGTTGTGCATAGCAAGGATGAAGCTTATAACCTATACCAAGAACATGGCTTCAAAATGGGTTTTAGTGTAAGAAAAGGAAAGGAACTGTATTATGATAATGATAAAAAGAACACACGTTTGAAAGATTTTTATTGTTCCAAACAAGGGTTTAAGAACAATGAACCTGAAGGTGAAATCGCAAGTAAAGTCACTTATCAAAGGGCTGATTCAAGAACAAATTGTAAAGCGATGGTGCGATTTAATGTCAGTAAGGATGGAGAATGGCGAATTACTAAGTTTATAATGGATCACAACCATGAATTTGTGCCGCTTGAGCAAAGACATCTGTTACGCTCTTTCAGAAAAGTATCAGAAGCCAAAGGAGGTCTCATAAAGTCTATGGTGAATGCTGGTATGAAAGTTACTAATATCTGGAATTATTTGGGTGAAGAAGTTGGCGGATATGATAAGCTCGGTATGACGATGAAGGATATGCATAATTTTGTCTACACTGAAAAGATGAAATTAATTGAAGCTGGAGATGCCCAATCTTTAGTCAATCACTTGCAAAATAGACAAGCACAAGATGCCATGTTCTACTATAGTGTGCAGTTAGACCAAGAATCACGTTTGACCAATGTATTTTGGAGAGATGGCAAGTCCAGAGTTGATTACGATTGTTTTGGAGATGTTGTGGTTTTTGATACCACTTACCGCACTAATAAATATAATTTGATCTGTGCTCCTTTTGTTGGTGTAAATCATCACGGGCAAAATGTCATGTTTGGTTGTGCTTTTTTATCCAATGAGACTTCAATTTCTTTTAATTGGCTATTTAAAGTGTTTTTGGAGAGCATGGGAAACAAACAACCAAAAACAATCTTTACAGATCAAGATGGAGCCATGGCTAAAGCAATCGGAGAGGTAATGCCGAATACAACTCATCGATTATGTTTATGGCATATATCTAAGAATGCACCTTCTCATTTGGGTGGTGATCTTAAATCTGATCTGAAGTTTCAAAGTTTGTTTAGAAAATGCATGTCAGGTTGTGATTCAAAAGAAGAATTTGAAAGCACTTGGAGTGATATGATTAATGAGTACAAGCTTCAAAATCATACGTGGTTGAGCGGTATGTATAAAATTCGACATAAATGGAGCACCGCATATAGCAAGGATGTGTTCTCTGCTGATATCAAGTCATCTCAAAGAAGTGAGAGTACAAATAGTGTGTTGGGCGACATTACTGGGAAAACAACTGGTCTTAGTCAATTCATATTAGCATTTGAGAAGATGGTAAACAAGTGGCGACAATTAGAGACTGAAAAGGAATTCAAAAATAGCCAAAGTATGCCTCCCCGCATCATAAATATCAGCGAAACTTTGCGACAGACATCTATGATATACACACACAAGATTTTCAAACTTTTTTTGAATGAATATCTTACTGGAACTGGTGGAAGTACTTCAAAAGACATTGGGGGATCTGATAATTTGTCATATCATGAAGTGAGTTCAAATCACATGTCTAATAAGAAACATATTGTAACATTTGACTCCTCTGCTACATCGATTAGTTGTAGTTGTCGAAAGTTTAACACTATGGCCATTCTTTGTAGCCATGCTTTAAGAATTTATAACATCAAAGGTATTTTAAGAATACCTGACCAATACTTTTTGAGAAGATGGTCAAAAAAGGCAAGGTCTGTAGTTTATGATCACATACATGAGAGTGCAAAAGAAGATTCTCTCTCAAAAAATGCAATGAACAATGACGACGGCGATTCCATGATCCTTTACCGCAATGCTATTATGAAGTTTTTTTATAATCTAGCTTTGGATAGTCAAGAACACAAAGAAACTCAACAGATAATGTGGAAATTGCTTTATAATGGAGCTCAGAGTGTGCAGCAATGCATTAGTGAGCTCAATTTGAATTTAAAAGGAACAACTAGTGACAACAATTTCACTCAAAATGAGGATACTGAACATGCTGCAATTTGTAACCCTCTTCCTGCACAAACTAAAGGAATGTCCTATACTCGCAAGAAAGGACATTTTGAAAAAAGGAAAGGATCAACAACAAAAGAAAAGCAACCTAAAAAGAAAAGAAAGAAAGATAACTTTTGTTCCATTAATTCTTCCATGGATGGGCCTTCTAATGTTCACAGTAACATAGACAACACTTTGAATGTTCCATTTACTTCTTTTGGTGCACCACCCATTCCATTTACTAGTATGCTACAAGGAACTAACTCATTAGTTCAGGAATCTTCAAATCACAGGTTTCCTCCAAGTAGTGCTTTCCAAGATAGACAAGCACTTGAAAGAAATTAG 2379 0.3577 MQDNECQPVEIDKYKDIFLGQVVHSKDEAYNLYQEHGFKMGFSVRKGKELYYDNDKKNTRLKDFYCSKQGFKNNEPEGEIASKVTYQRADSRTNCKAMVRFNVSKDGEWRITKFIMDHNHEFVPLEQRHLLRSFRKVSEAKGGLIKSMVNAGMKVTNIWNYLGEEVGGYDKLGMTMKDMHNFVYTEKMKLIEAGDAQSLVNHLQNRQAQDAMFYYSVQLDQESRLTNVFWRDGKSRVDYDCFGDVVVFDTTYRTNKYNLICAPFVGVNHHGQNVMFGCAFLSNETSISFNWLFKVFLESMGNKQPKTIFTDQDGAMAKAIGEVMPNTTHRLCLWHISKNAPSHLGGDLKSDLKFQSLFRKCMSGCDSKEEFESTWSDMINEYKLQNHTWLSGMYKIRHKWSTAYSKDVFSADIKSSQRSESTNSVLGDITGKTTGLSQFILAFEKMVNKWRQLETEKEFKNSQSMPPRIINISETLRQTSMIYTHKIFKLFLNEYLTGTGGSTSKDIGGSDNLSYHEVSSNHMSNKKHIVTFDSSATSISCSCRKFNTMAILCSHALRIYNIKGILRIPDQYFLRRWSKKARSVVYDHIHESAKEDSLSKNAMNNDDGDSMILYRNAIMKFFYNLALDSQEHKETQQIMWKLLYNGAQSVQQCISELNLNLKGTTSDNNFTQNEDTEHAAICNPLPAQTKGMSYTRKKGHFEKRKGSTTKEKQPKKKRKKDNFCSINSSMDGPSNVHSNIDNTLNVPFTSFGAPPIPFTSMLQGTNSLVQESSNHRFPPSSAFQDRQALERN* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5856 792 Pfam FAR1 DNA-binding domain 32 124 IPR004330 -
Tpr2g5856 792 PANTHER OS12G0160900 PROTEIN 13 673 - -
Tpr2g5856 792 Pfam MULE transposase domain 245 339 IPR018289 -
Tpr2g5856 792 MobiDBLite consensus disorder prediction 687 722 - -
Tpr2g5856 792 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 673 IPR031052 GO:0006355
Tpr2g5856 792 SMART 26again6 539 566 IPR006564 GO:0008270
Tpr2g5856 792 MobiDBLite consensus disorder prediction 772 792 - -
Tpr2g5856 792 ProSiteProfiles Zinc finger SWIM-type profile. 528 564 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5856 Tpr-Chr2 69912803 69915349 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr2g5856 MULE 3.9e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5856 - - lja:Lj4g3v2120630.1 1109.36