Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5853 ATGCAAAGAAATATTAACAACAATGGTATGCATCAAGCATGTGCAGCATGCAAACATCAAAGAAAAAAATGCAGTGAAAATTGCATATTAGCACCTTACTTTCCATCAAATAAAAGTAAAGAATTCAAAGCAGTGCACAAAGTTTTTGGTGTTAGCAACATAACAAAATTGGTAAGGAATGCTCAAGAAGTAGACAGAAGAAGAGTTGTGGATTCATTGATATGGGAAGCAATTAGTAGACAAAAGGATCCTATAAATGGTTCTTATGGAGAGTATATAAAAGTATGCAATGAGTATAAAAAAATATTTGAAGAACTTAAGATGTTTAGAGAACACCAAAATCAATTGTTGCAAATGCCACCTCATCATGAGAATAAGAATGGTATTATGGATTCTACTACAATTTATAATTCATATTGTTCAAATTATTTACAAGATCTTGAGAGTTTGAGGACAGAAGTTGTCATCCCAATTCAGCAGCACTCTCAGTCATACTATATTACAGGTGATGAATTCAACCAATGA 525 0.32 MQRNINNNGMHQACAACKHQRKKCSENCILAPYFPSNKSKEFKAVHKVFGVSNITKLVRNAQEVDRRRVVDSLIWEAISRQKDPINGSYGEYIKVCNEYKKIFEELKMFREHQNQLLQMPPHHENKNGIMDSTTIYNSYCSNYLQDLESLRTEVVIPIQQHSQSYYITGDEFNQ* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5853 174 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Tpr2g5853 174 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Tpr2g5853 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 5 131 - -
Tpr2g5853 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5853 Tpr-Chr2 69838097 69840449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5853 11 110 AS2 family AT1G06280 62.000 5.04e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr2g5853 LOB 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5853 - - vra:106780610 241.506