Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5852 ATGGCGGTTCCTTTTCTTCTCCGTTCTCTCTACTCTTCCACCAAAAAATCATTTTCCTCTTCTTCACCTTTCACTCCATCTCCCTCTCGTTTCTTCTCCCGTGCCTTCTCTTCCGCACCCGCCGCCTCCACCCATCCCACCGTATCCCCTGACCCTAGCCGCCTCCGCAACGTCGCCGTCATCGCTCATGTCGACCACGGCAAGACAACTCTCATGGACCGACTTCTCCGTCAGTGCGGTGCTGATATCCCTCACGAACGCGCCATGGATTCCATTAATCTCGAAATTGAGCGCGGCATCACCATATCTTCCAAGGTTACTTCTGTTTTGTGGAAAGAAAATGAGCTCAACTTGGTGGATACTCCTGGACACGCTGATTTTGGTGGTGAGGTTGAACGTGTAGTTGGTATGGTTGAGGGAGCAGTTTTGGTTGTTGATGCTGGGGAAGGTCCACTTGCCCAAACTAAGTTTGTTCTTGCAAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGATCGGCCATCAGTTACCGAGGAGATGTGCAATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCCAATCTGGGTGCTACAGAGGAGCAACTTGACTTCCCAGTTCTTTATTCTTCTGCTAAAGAAGGATGGGCATCCACCACTTATACCAAGGATCCTCCTGCCGAAGCCAAAAATATGTCACAGTTGCTTGATGCCATTGTATCACATGTCCTTCCACCAAATGCAAACATTGATGCCCCTTTCCAAATGCTGGTTTCAATGATGGAGCGGGACTCGTATCTTGGGCGGATTTTGACTGGTCGTGTGCATTCCGGGGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAAAGATTCTGGCGCCGAAAAAATTGAAGATGGAAAGGTTGTGAAAGTAATGAAAAAGAGGGGTACAACCATGATTGTAACTGATTGTGCTGGAGCTGGGGATATAGTTTCAATTGCTGGTTTGTCAAGTCCATCAATCGGCCATACAGTCACTTCTGTGGAGATTATGTCTGCATTACCCACAGTTGAATTGGACCCCCCAACAATTTCTATGACCTTTGGTGTAAATGACTCCCCATTAGCGGGCCGTGACGGTACTCATTTAACTGGGGGAAAAATTGGTGATCGACTAATGGCTGAAGCTGAAACCAACCTTGCCGTAAATGTGCTTCCAGGCATGTCAGAAACATTTGAAGTTCAAGGAAGAGGAGAACTACAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAGGGATTTGAGCTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGACAATGGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGATGAGCACGTTGGCTTTGTAATGGAGGCCTTGTCTCACCGACGAGCTGAGATTACTGACATGGGTCCTGTCGCGGGAGCTCTTGGTCGAACTAAATTGTGTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTATATTCAGCAGTGAGACGCGTGGAACTGGGTTCATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTATCAGTGGGTTATGGTCCGATCACAGCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCTCCTGGAATGGAGACATATGATGGAATGATTGTTGGAGAACATTCACGGGATACAGATCTTGATGTTAATCCAGTGAGGGCTAAACAACTTACAAATATACGTTCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCTCGCCTTATGACGCTGGAAGAAGCTATAGGGTATGTAGCTTCAGACGAGCTTATCGAGGTTACCCCAAAGACCATCCGGTTACGAAAGAAATACCTTGATGCTAACAAGCGTAAAACCATGAGTAAAAGGCAAAAGGAATGA 1992 0.4634 MAVPFLLRSLYSSTKKSFSSSSPFTPSPSRFFSRAFSSAPAASTHPTVSPDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLEIERGITISSKVTSVLWKENELNLVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEEMCNEVESLVFDLFANLGATEEQLDFPVLYSSAKEGWASTTYTKDPPAEAKNMSQLLDAIVSHVLPPNANIDAPFQMLVSMMERDSYLGRILTGRVHSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKVMKKRGTTMIVTDCAGAGDIVSIAGLSSPSIGHTVTSVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAVNVLPGMSETFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTDNGQKLEPIEEVTIEVNDEHVGFVMEALSHRRAEITDMGPVAGALGRTKLCLTCPSRGLVGYRSIFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGYGPITAHALMSLEARGTLFVSPGMETYDGMIVGEHSRDTDLDVNPVRAKQLTNIRSASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDANKRKTMSKRQKE* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5852 663 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 55 655 IPR006298 GO:0005525
Tpr2g5852 663 TIGRFAM small_GTP: small GTP-binding protein domain 56 192 IPR005225 GO:0005525
Tpr2g5852 663 Pfam Elongation factor G C-terminus 452 535 IPR000640 -
Tpr2g5852 663 SUPERFAMILY EF-G C-terminal domain-like 454 570 IPR035647 -
Tpr2g5852 663 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 662 - -
Tpr2g5852 663 CDD BipA_III 362 439 - -
Tpr2g5852 663 Pfam Elongation factor Tu domain 2 272 346 IPR004161 GO:0005525
Tpr2g5852 663 PANTHER ELONGATION FACTOR FAMILY PROTEIN 5 662 - -
Tpr2g5852 663 CDD BipA_TypA_II 258 355 - -
Tpr2g5852 663 Gene3D bipa protein 540 655 IPR042116 -
Tpr2g5852 663 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 53 251 IPR000795 GO:0003924|GO:0005525
Tpr2g5852 663 Pfam Elongation factor Tu GTP binding domain 54 247 IPR000795 GO:0003924|GO:0005525
Tpr2g5852 663 CDD TypA_BipA 55 250 - -
Tpr2g5852 663 Gene3D Translation factors 252 356 - -
Tpr2g5852 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 260 IPR027417 -
Tpr2g5852 663 Gene3D - 53 251 IPR027417 -
Tpr2g5852 663 PRINTS GTP-binding elongation factor signature 57 70 IPR000795 GO:0003924|GO:0005525
Tpr2g5852 663 PRINTS GTP-binding elongation factor signature 97 105 IPR000795 GO:0003924|GO:0005525
Tpr2g5852 663 PRINTS GTP-binding elongation factor signature 117 127 IPR000795 GO:0003924|GO:0005525
Tpr2g5852 663 PRINTS GTP-binding elongation factor signature 133 144 IPR000795 GO:0003924|GO:0005525
Tpr2g5852 663 PRINTS GTP-binding elongation factor signature 169 178 IPR000795 GO:0003924|GO:0005525
Tpr2g5852 663 SUPERFAMILY EF-G C-terminal domain-like 360 443 IPR035647 -
Tpr2g5852 663 SUPERFAMILY Translation proteins 200 355 IPR009000 -
Tpr2g5852 663 Gene3D - 445 539 - -
Tpr2g5852 663 Gene3D Elongation Factor G (Translational Gtpase), domain 3 363 647 - -
Tpr2g5852 663 CDD BipA_TypA_C 454 534 IPR035651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5852 Tpr-Chr2 69819318 69833907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5852 54 178 Eukaryotic Initiation Factors Gene Family AT3G22980 43.511 3.56e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5852 K06207 - gmx:100782425 1115.52