Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5842 ATGGGTGGATTCATGTTAGGTTCAAAGAAAAAGAAAAACAATAAGGGTCAAGGCGGTTTTGAAACACTAGGTCTAAATCCAAATGTTTTCAGAGGAATCAGAAATAAAGGTTACAAAGTTCCGACTCCAATTCAGAGGAAGACAATGCCTCTCATTCTTTCCGGCGTAGATGTCGTTGCTATGGCTCGTACTGGCTCTGGCAAAACGGCGGCGTTTCTTGTTCCCATGCTTCACCGACTTAACCAGCATATTCCTCAGGGTGGCGTTAGAGGACTCATTTTGTCTCCGACTAGGGATTTGGCACTTCAAACTCTTAAGTTCACTCAAGAGCTTGGTCGCTACACAGATCTTCATGTTAGTTTGTTAGTTGGGGGTGATAGTATGGAAAGTCAATTTGAGGAGTTAGCTCAGAGTCCAGACATTATAATTGCCACTCCCGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGTAAGGTGGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTCGGGATGGGTTTTGCTGATCAGCTACATCAAATTCTTGCTCAGCTTGGTGAGAACCGTCAGACTTTGCTTTTCAGTGCCACATTACCCAGCGCTCTTGCAGAATTTGCTAAGGCCGGTCTGCGAGACCCTCGCCTTGTTCGCCTCGATTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGTCTTTTTCACTTTGAGGCAGGAAGAGAAGTATGCTGCTTTGCTCTATTTAATTAGGGAACTTATCGGTTCTGATGAGCAGACTTTAATTTTTGTATCCACTAAACATCATGTTGAGTTTCTCAACTCGTTGTTTCGGCAAGAGGGAATTGAGCCTTCTGTATGTTATGGAGACATGGATCAAGATGCACGCAAAATCAATGTGAACAGGTTTAGGTCTAGAAGGACAATGTTGTTGATTGTCACCGACATTGCTGCTCGGGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCTTCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGAGTTGCAAGGGCGGGTCGTACTGGTACTGCTTATTCTTTCTTGACTACCGAGGATATGGCTTACCTCTTGGATCTTCATTTGTTTCTCTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAAGTCTTGCAGGATATGGATGGAGTAATGTCAAGGATTGACCAGGCAATGGCAAACAGAGAAACCATTTATGGCCGTTTTCCACAAAAAGTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTTCTGCAGAGCTGGAAGCGTTGCAGAGAGCCTGTAAAAATGCATTCCGTTTATATTCTAAAACAAAACCCTTACCCTCAAAGGAGTCCATAAGAAGAGTAAAGGATTTGCCAAAAGAAGGTCTGCATCCTATTTTCAATAAAATGTTGGGAACAGGGGAGTTAACGGCAATTGCATTTTCCGAGCATCTGAAAAAGTTTAGGCCAAAGCAGACAATTTTGGAAGCAGAAGGAGAAGCAGCTAAATCAAAGGGTGGTCAGAGGGTTGATGTGATGAAAAGAAAAAGAGCCGTTCATGACAGCACTATAAATTTGGTTCATGAACACCAATCTAAGACTAAGAGTAACAATGAAAAGGACGAAAATCATTTGGAAATTTCTTCTTCCGTGGAGAAAGGGAGAAAAGCACGCGGTTCTAAGAGAAAGTCAGAAAGCTTCAAGGACGAGGATTTCTATATAAGTTCTATACCTAAAAATCATCACATGGAAGCAGGCCTTGCAGTAAAAGCTAAAGAAGGCTTTAATTCAAACAGATTGGATGATGCTGTCCTAGACCTAGTTGCAGATGATGGTGCTGGCATTAAGAAACAAAAATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCGAAAACAAAAACCAACAAGACTGGTATATATAAAAAGTGGAAGGAACGCTCACACTCTAAGATATCTCTTAAAGGGACAAGTGCTGATGGTGATGCTCAGGAATCAACAAGTTCTAGAGGATCTTACCGAGCAGGTGGTAGGAATTTCAGAGGTGGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGACAGAAAAAAGCCAACAAAATTTCTCATATGAAGAACAAGTCAGCAAAGGGTAAAAAATCTGGCAGAAAGGAAAATAATAATAATAAAAGAAAATTTAAGTAG 2331 0.4123 MGGFMLGSKKKKNNKGQGGFETLGLNPNVFRGIRNKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHRLNQHIPQGGVRGLILSPTRDLALQTLKFTQELGRYTDLHVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFADQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFRQEGIEPSVCYGDMDQDARKINVNRFRSRRTMLLIVTDIAARGIDIPLLDNVINWDFPSKPKIFVHRVGRVARAGRTGTAYSFLTTEDMAYLLDLHLFLSKPIKAAPTEEEVLQDMDGVMSRIDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELEALQRACKNAFRLYSKTKPLPSKESIRRVKDLPKEGLHPIFNKMLGTGELTAIAFSEHLKKFRPKQTILEAEGEAAKSKGGQRVDVMKRKRAVHDSTINLVHEHQSKTKSNNEKDENHLEISSSVEKGRKARGSKRKSESFKDEDFYISSIPKNHHMEAGLAVKAKEGFNSNRLDDAVLDLVADDGAGIKKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKTNKTGIYKKWKERSHSKISLKGTSADGDAQESTSSRGSYRAGGRNFRGGKKQHSMPNAHVRSEIKDMDQIRKERQKKANKISHMKNKSAKGKKSGRKENNNNKRKFK* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5842 776 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Tpr2g5842 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Tpr2g5842 776 MobiDBLite consensus disorder prediction 543 577 - -
Tpr2g5842 776 CDD DEADc_DDX54 18 223 - -
Tpr2g5842 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Tpr2g5842 776 SMART DBP10CT_2 620 682 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Tpr2g5842 776 MobiDBLite consensus disorder prediction 684 776 - -
Tpr2g5842 776 MobiDBLite consensus disorder prediction 725 744 - -
Tpr2g5842 776 SMART ultradead3 37 237 IPR014001 -
Tpr2g5842 776 CDD SF2_C_DEAD 244 365 - -
Tpr2g5842 776 Coils Coil 736 756 - -
Tpr2g5842 776 SMART helicmild6 275 356 IPR001650 -
Tpr2g5842 776 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Tpr2g5842 776 Gene3D - 5 225 IPR027417 -
Tpr2g5842 776 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 9 768 - -
Tpr2g5842 776 Gene3D - 235 470 IPR027417 -
Tpr2g5842 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Tpr2g5842 776 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 768 - -
Tpr2g5842 776 MobiDBLite consensus disorder prediction 1 21 - -
Tpr2g5842 776 MobiDBLite consensus disorder prediction 745 776 - -
Tpr2g5842 776 MobiDBLite consensus disorder prediction 689 709 - -
Tpr2g5842 776 Pfam DBP10CT (NUC160) domain 620 681 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Tpr2g5842 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5842 Tpr-Chr2 69705024 69712486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5842 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 32.796 1.79e-59 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5842 K14808 - gmx:100806274 1240.71