Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5811 ATGGTAATGGAGATTGTAATTTCTTTGATAATCTTATTTGTTGGGATTGGTATTTTGGTGTCTATTCATTTCTGCATAGTTGGGAGAGCATTCAGAAGAGATAGTAATAGTGGTGGAGACATTCAAGGGCAGAGTAGTAGTACTAGGAGCACTTCAAAAGGAATGTTTGGTGGTGACTTGAAGAACCTTCCTTGTTTTGATTATGTGGAACCAATAGAGAAAGGATACAACAACCTTGTGGATTGTGCTGTTTGTTTGGAGAGTTTTAAGGTTGGTGATGCTTGTAGATTGTTGCCTAAATGCAGACACAGTTTTCATGTTCAGTGTATAGATTTGTGGATTATGAAGACACCCTTTTGTCCAATTTGTAGAACATGGGTTTATTCAAGAGTAATTATGAGGGAAGAAAGTGTTGCTTCTGGTTCTGATATTGTAGAAATTGAAATGCCATAA 453 0.3664 MVMEIVISLIILFVGIGILVSIHFCIVGRAFRRDSNSGGDIQGQSSSTRSTSKGMFGGDLKNLPCFDYVEPIEKGYNNLVDCAVCLESFKVGDACRLLPKCRHSFHVQCIDLWIMKTPFCPICRTWVYSRVIMREESVASGSDIVEIEMP* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5811 150 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 147 - -
Tpr2g5811 150 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Tpr2g5811 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 147 - -
Tpr2g5811 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 128 IPR013083 -
Tpr2g5811 150 SMART ring_2 82 123 IPR001841 -
Tpr2g5811 150 SUPERFAMILY RING/U-box 81 130 - -
Tpr2g5811 150 Pfam Ring finger domain 81 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5811 Tpr-Chr2 68785748 68786200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5811 52 128 C3H Transcription Factor Family AT4G30370 45.455 9.28e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5811 - - gmx:102662620 167.162