Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g5799 | ATGAGCCGAAACATGAACAATTTCACGCCTTTGCCAGGGCTTTGGAGAACAGGTTCTAGAGCCTATGGTGACGCTTCTCATAATTCCAATAATAGTCACGAATTCAATGAAGTGCCTGTGTTTTACAGATCTCATCACTCTACTAGGGCCAATGATGAGAGGAGTTCAGGTGCACAAGATCCGTTGCGGTTGTGGGAAGTTAGAAGAACTCCTGAAGAACATCACAGAATACCAAATTTTTCAGCACAACCACCTAGAAGACAACAAACTTATGTTCAAAATGAGGACATGAGAAGGGGTTTCAATTTCAACCCAACCAGACTCGGACAGATTTTTCAGCATTCACCTTCAAGATCAACATCAACAGAACAAACAAACACACAAGTTCCACAATTGGTAGAAAATTCAAAATCAACTATTTTGAGCAAATTAAGGAACGTAGTCTATGATCCTACACCGAAGCGGTTAGCTAGAAAAGTGAGCTTATATTATAGAGGAAATGCTGCAAATGATTTGAAAGATAGTGTGAAAGAAAATAAGGAAGATGGTATGAGATGTGCTATTTGCTTAGAAGATTTTGAGGCCAAAGAAGAAGTGATGCTTACTCCATGCAACCACATGTTTCATGAGGATTGTATTGTTACTTGGTTAACAAGTAAAGGTCAGTGTCCAGTCTGTAGGTTTGTGGTTTTTGAGGGAGTAAAGGGAAACGCTTCATCTTTTAATAGGAATGATATTCCCAATTTGGAACCTAATGATATGATCTCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAGTTAGAAGTGTGA | 825 | 0.3915 | MSRNMNNFTPLPGLWRTGSRAYGDASHNSNNSHEFNEVPVFYRSHHSTRANDERSSGAQDPLRLWEVRRTPEEHHRIPNFSAQPPRRQQTYVQNEDMRRGFNFNPTRLGQIFQHSPSRSTSTEQTNTQVPQLVENSKSTILSKLRNVVYDPTPKRLARKVSLYYRGNAANDLKDSVKENKEDGMRCAICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVVFEGVKGNASSFNRNDIPNLEPNDMISGELLSILRAMEEAFQLEV* | 275 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g5799 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 227 | IPR001841 | - | |
Tpr2g5799 | 274 | CDD | RING-H2_PA-TM-RING | 186 | 227 | - | - | |
Tpr2g5799 | 274 | SUPERFAMILY | RING/U-box | 179 | 232 | - | - | |
Tpr2g5799 | 274 | Pfam | Ring finger domain | 185 | 227 | IPR001841 | - | |
Tpr2g5799 | 274 | SMART | ringv_2 | 185 | 227 | IPR011016 | GO:0008270 | |
Tpr2g5799 | 274 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 2 | 273 | - | - | |
Tpr2g5799 | 274 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 2 | 273 | - | - | |
Tpr2g5799 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 240 | IPR013083 | - | |
Tpr2g5799 | 274 | SMART | ring_2 | 186 | 226 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g5799 | Tpr-Chr2 | 68429568 | 68431425 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g5799 | 135 | 270 | C3H Transcription Factor Family | AT3G58720 | 48.592 | 3.01e-39 | 135 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g5799 | - | K19041 | gmx:100810607 | 320.472 |