Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5799 ATGAGCCGAAACATGAACAATTTCACGCCTTTGCCAGGGCTTTGGAGAACAGGTTCTAGAGCCTATGGTGACGCTTCTCATAATTCCAATAATAGTCACGAATTCAATGAAGTGCCTGTGTTTTACAGATCTCATCACTCTACTAGGGCCAATGATGAGAGGAGTTCAGGTGCACAAGATCCGTTGCGGTTGTGGGAAGTTAGAAGAACTCCTGAAGAACATCACAGAATACCAAATTTTTCAGCACAACCACCTAGAAGACAACAAACTTATGTTCAAAATGAGGACATGAGAAGGGGTTTCAATTTCAACCCAACCAGACTCGGACAGATTTTTCAGCATTCACCTTCAAGATCAACATCAACAGAACAAACAAACACACAAGTTCCACAATTGGTAGAAAATTCAAAATCAACTATTTTGAGCAAATTAAGGAACGTAGTCTATGATCCTACACCGAAGCGGTTAGCTAGAAAAGTGAGCTTATATTATAGAGGAAATGCTGCAAATGATTTGAAAGATAGTGTGAAAGAAAATAAGGAAGATGGTATGAGATGTGCTATTTGCTTAGAAGATTTTGAGGCCAAAGAAGAAGTGATGCTTACTCCATGCAACCACATGTTTCATGAGGATTGTATTGTTACTTGGTTAACAAGTAAAGGTCAGTGTCCAGTCTGTAGGTTTGTGGTTTTTGAGGGAGTAAAGGGAAACGCTTCATCTTTTAATAGGAATGATATTCCCAATTTGGAACCTAATGATATGATCTCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAGTTAGAAGTGTGA 825 0.3915 MSRNMNNFTPLPGLWRTGSRAYGDASHNSNNSHEFNEVPVFYRSHHSTRANDERSSGAQDPLRLWEVRRTPEEHHRIPNFSAQPPRRQQTYVQNEDMRRGFNFNPTRLGQIFQHSPSRSTSTEQTNTQVPQLVENSKSTILSKLRNVVYDPTPKRLARKVSLYYRGNAANDLKDSVKENKEDGMRCAICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVVFEGVKGNASSFNRNDIPNLEPNDMISGELLSILRAMEEAFQLEV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5799 274 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Tpr2g5799 274 CDD RING-H2_PA-TM-RING 186 227 - -
Tpr2g5799 274 SUPERFAMILY RING/U-box 179 232 - -
Tpr2g5799 274 Pfam Ring finger domain 185 227 IPR001841 -
Tpr2g5799 274 SMART ringv_2 185 227 IPR011016 GO:0008270
Tpr2g5799 274 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 273 - -
Tpr2g5799 274 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 273 - -
Tpr2g5799 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 240 IPR013083 -
Tpr2g5799 274 SMART ring_2 186 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5799 Tpr-Chr2 68429568 68431425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5799 135 270 C3H Transcription Factor Family AT3G58720 48.592 3.01e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5799 - K19041 gmx:100810607 320.472