Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5779 ATGGCTTATCCATATTATCGATCACAGTTCGGAGACACAACATTCACCAAGGTTTTTGTTGGAGGATTAGCTTGGGAAACACCAACTGATGAAATGAGGACATATTTTGAACAGTTTGGTGACATTCTTGAAGCTGTCATCATCACTGATAAGAACACCGGAAAATCTAAAGGATATGGATTTGTAACATTTCGTGATTCAGAATCAGCTAGAAGAGCTTGTACTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCTCCAAGAGGGAGGGGTACATATCATCAAGGTGGAGGAGGGATGGGGACTGGAGCACCGGGAGGGGCAGCGTACGGTGGTGTTCCGGCAGGAGGGCCACCACAATTGGCAGGAGGAGCTGGAACTCCAGTAATGTACCAACCATATGGCTACCCCACCTACACTCCTGAATATGGGTACCATCAAGCTACAATGTATAACACTCAGATGCAGCAAGCACAATACTATCAACAACTCTATGGACCATCATCTTCAACAATGGCTTCACCATATTACTATGGATATTCTGTGCAACCAAGAGGAGGGGGTACATTTTCTACACCTCAACCACATCGTATGCCAGCTGGCCCATCCTATCTATACTACCCTCCTACACCAATAGAAGGAGGTTCCTTTTCTGCTGCAGCATATCGTCCTATTCAACAACAACCTTTAATAAGGCACCCTTCTCCTTCCCCTTCTCCTAATGATTCACAGACTCAGCAACATACCTCATCAGAGACAGCATCTGGAGTAGTTATAACTTCGGAAAGTTCAAATACTCAACGGAAGAACAACAACTAA 861 0.446 MAYPYYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDSESARRACTDPNPVIDGRRANCNIASLGRPRPSPPRGRGTYHQGGGGMGTGAPGGAAYGGVPAGGPPQLAGGAGTPVMYQPYGYPTYTPEYGYHQATMYNTQMQQAQYYQQLYGPSSSTMASPYYYGYSVQPRGGGTFSTPQPHRMPAGPSYLYYPPTPIEGGSFSAAAYRPIQQQPLIRHPSPSPSPNDSQTQQHTSSETASGVVITSESSNTQRKNNN* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5779 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Tpr2g5779 286 PANTHER GEO13361P1-RELATED 1 274 - -
Tpr2g5779 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 74 IPR000504 GO:0003723
Tpr2g5779 286 MobiDBLite consensus disorder prediction 238 286 - -
Tpr2g5779 286 Gene3D - 7 127 IPR012677 -
Tpr2g5779 286 SMART rrm1_1 17 89 IPR000504 GO:0003723
Tpr2g5779 286 PANTHER - 1 274 - -
Tpr2g5779 286 SUPERFAMILY RNA-binding domain, RBD 9 121 IPR035979 GO:0003676
Tpr2g5779 286 CDD RRM_RBM24_RBM38_like 16 91 - -
Tpr2g5779 286 MobiDBLite consensus disorder prediction 251 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5779 Tpr-Chr2 67643993 67651499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5779 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.79e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5779 K25006 - gmx:100787086 360.918