Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5778 ATGGAAAAAGCATTTGATACTCTTGATTCTGTTGGTCCTGGTGTTCGGGCATGGCGATTCAAGGTTCGAATTCTTCGTTTGTGGAATCTGTATTCTTTCGCAAAACCTAATCAACTTAATTCAATTGAGATGGTACTTATTGATGAAAAGGGTGACAAGATTCATGCAACTGTTCCTCCCCATTTGTTGAATTTGTTTCGTTTCAAACTCAATGAAGGTGATGTCTATAGGTTGTTTTATTTCAAAGTACATAAGGTATCTGGTCTTTACCGCACAACTCCACACCCCTATAAACTTATCTTCCAGTTGAAAACAAAGGTTCAAAGCTGTGAAAATAATGGTATAGATCGATTTGGATTGTCACTAAGTAATATTCGAGACATATGCAATCGTACTTCTGGTCATGAGTTTTTAGTTGATGTTGTTGGGTTGATCACTGGTATTTCTCCTCCTAAGGAATATGTTTTTTGTGGAAAGATTACTCCCATGATTGTGTTTGAGATGGCTGATTATAGTGGAAAGTGTGAATGCATTATGTCCGGTGATGATGTTGGTGATCTTGAGAAGATGCTTGGCTGTGGTGATAATGGATTACCTCTTATGATAGTTCAGTTTGCGAAAATTAGAAATTTTAGAGGAAATGTTGCTATTCAAGGTGTGTTGAGCACAAGGTTTTATGTTAATCCTTCAATACCAGAAGCTATTTCTTTCAAGAATGGTCTTCCTATTGAAGGTGTTGAAACATTGTCTTCCATTCCTGCTTTTGGGTTTCAACCTAAGCCAGCTTTTGAGGATGATTTTTTGGTTAATTATCCCAAAATTTCCATAGTTAATTTACTTGAAAGTGTTGAAAACGGTATTTATGTTGTTGGTGCTACTGTTGATGGATTGGTCGAGGGTGAGGATTGGTGGTATCCCGGATGTAGTTGTGCTAGAATAGTTTCTGCTGACTCTGGTGCATTTTATTGCAAGCCATGCACAAAACGTCCTTTTGAAATGGTTCCAAGGTTTAGGGTAAAGCTCAAGGTTTGTGATGGATCTGGGCAAGCTATTTTCATTGTTTTTGATGATGATATGTGTTGGTGTTTTGATTGA 1095 0.3735 MEKAFDTLDSVGPGVRAWRFKVRILRLWNLYSFAKPNQLNSIEMVLIDEKGDKIHATVPPHLLNLFRFKLNEGDVYRLFYFKVHKVSGLYRTTPHPYKLIFQLKTKVQSCENNGIDRFGLSLSNIRDICNRTSGHEFLVDVVGLITGISPPKEYVFCGKITPMIVFEMADYSGKCECIMSGDDVGDLEKMLGCGDNGLPLMIVQFAKIRNFRGNVAIQGVLSTRFYVNPSIPEAISFKNGLPIEGVETLSSIPAFGFQPKPAFEDDFLVNYPKISIVNLLESVENGIYVVGATVDGLVEGEDWWYPGCSCARIVSADSGAFYCKPCTKRPFEMVPRFRVKLKVCDGSGQAIFIVFDDDMCWCFD* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5778 364 CDD RPA1_DBD_A_like 21 107 - -
Tpr2g5778 364 SUPERFAMILY Nucleic acid-binding proteins 278 358 IPR012340 -
Tpr2g5778 364 Gene3D - 4 110 IPR012340 -
Tpr2g5778 364 SUPERFAMILY Nucleic acid-binding proteins 121 245 IPR012340 -
Tpr2g5778 364 CDD RPA1_DBD_B_like 140 238 - -
Tpr2g5778 364 PANTHER REPLICATION FACTOR A 1, RFA1 22 359 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr2g5778 364 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 359 - -
Tpr2g5778 364 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Tpr2g5778 364 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Tpr2g5778 364 Gene3D - 267 361 IPR012340 -
Tpr2g5778 364 Gene3D - 115 245 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5778 Tpr-Chr2 67601765 67603376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5778 1 358 Core DNA Replication Machinery Family AT5G08020 21.615 5.03e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5778 - - mtr:MTR_8g062030 352.829