Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5774 ATGAATACTCCTTTTGATTTGGTTGGTTCTGTTTCTCCCGGTAGAGATTCATGGCGTTTCAAAGTGCGTGTTGTTCGCTTATGGAGTGTTTCTGCTTTTTTGTACCTTGATCAGGTTAACTCGATTGAGATGGTGCTGATTGATGAGAAGGGGGCTAAGATTCATGCAACTATTCGCCGTCAACTACTCTATTTGTTTGCTTCCAAGGTTGCTGAAGGGAATGTTTATAAGATGTCTTATTTCAGTGTTATGCCAGAATCTGGTTTGTATCGTACAACCACACATCCATACAAACTGATGTTTGAGATGAAGACAAAGGTTCAGATATCTGAAAGTAGTAAAATAGATCTATATGGATTATCTCCCACCTCTATTGATGAAATTTGTGGCTATGGACCTGATCATGACTTTTTAGTTGATGTTGTTGCTTTGATTACTGGTGTTACTGAAGAAAGGGAGTATGTACGTGATGGAAAGGTTTGTAAGATGATTGTCCTTGAGCTGTCTGATAAGAGTGGGAAGTGTGGTTGTACATTGTTTGGTGCTTATGCTAATCAGCTTAAAGATTTGCTTGCCAAGAATGATGTTGGATTGCCAACTGTTGTGGTTCAGTTTGCCAAAATAAAGATGTTTGCAGGTAAAGTATCAGTTCAAAATGTTATGAATGCTACAAAGATTCATGTTAATCCTTCCATCCCTGAAGTTGTTTCCTTCAAGCAAGCCATGGTTGTTGATGGTGCTGAAACTTCTGTTTCCATAGCTCATATTGGTCATCCTATTAAGCCATCTTTTGAAGAAGAGTTTTTGTCCAAGTATCCTAAGACTTCCATAGGTCATTTACTTGAGTTGGCTAATGATGGTATCTATATAGTTAGTGCTGTTGTTGTTGGATTGGTTGATGGTCAAGATTGGTGGTATCCTGCCTGTAAGTGTCATAAAAGTCTTACTCCTGACTCAGGGAGTTTCTTTTGCAAGAAATGTGACAAACATGTATTTAAAATGGTTCCAAGGTTCAGGGTTAAACTGATGGTTGATGATGGGACTGCTGAATGTGTGTTTGTTGTTTTTGATGGTGATATGAATATATTGGTTGGAAAACATTGTCAAGAATTGGTTGCTGGAGCCAAGGTTTAG 1134 0.3836 MNTPFDLVGSVSPGRDSWRFKVRVVRLWSVSAFLYLDQVNSIEMVLIDEKGAKIHATIRRQLLYLFASKVAEGNVYKMSYFSVMPESGLYRTTTHPYKLMFEMKTKVQISESSKIDLYGLSPTSIDEICGYGPDHDFLVDVVALITGVTEEREYVRDGKVCKMIVLELSDKSGKCGCTLFGAYANQLKDLLAKNDVGLPTVVVQFAKIKMFAGKVSVQNVMNATKIHVNPSIPEVVSFKQAMVVDGAETSVSIAHIGHPIKPSFEEEFLSKYPKTSIGHLLELANDGIYIVSAVVVGLVDGQDWWYPACKCHKSLTPDSGSFFCKKCDKHVFKMVPRFRVKLMVDDGTAECVFVVFDGDMNILVGKHCQELVAGAKV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5774 377 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
Tpr2g5774 377 Gene3D - 114 252 IPR012340 -
Tpr2g5774 377 Gene3D - 6 109 IPR012340 -
Tpr2g5774 377 Gene3D - 274 376 IPR012340 -
Tpr2g5774 377 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Tpr2g5774 377 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr2g5774 377 SUPERFAMILY Nucleic acid-binding proteins 285 373 IPR012340 -
Tpr2g5774 377 CDD RPA1_DBD_C 281 372 IPR013955 -
Tpr2g5774 377 CDD RPA1_DBD_A_like 21 107 - -
Tpr2g5774 377 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Tpr2g5774 377 CDD RPA1_DBD_B_like 140 242 - -
Tpr2g5774 377 SUPERFAMILY Nucleic acid-binding proteins 121 242 IPR012340 -
Tpr2g5774 377 Pfam Replication factor-A C terminal domain 294 372 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5774 Tpr-Chr2 67551547 67553257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5774 10 365 Core DNA Replication Machinery Family AT5G08020 24.000 1.56e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5774 - - mtr:MTR_8g062030 422.935