Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5730 ATGAACACACCCATTACCAGAAAAGAAATGGATCGGATCAAAGGTCCATGGAGTCCTGAAGAAGATGAAGCACTTCAAAAGCTTGTTGAAAAGCACGGTCCAAGAAACTGGTCGATTATAAGTAAATCGATTCCAGGGAGGTCTGGGAAATCGTGCAGGCTTCGTTGGTGTAATCAGCTTTCACCACAAGTTGAGCATCGGGCTTTTACACCTGAAGAAGATGATACTATAATCAGAGCCCATGCTCGATTTGGTAATAAATGGGCTACGATTGCTAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAAAATCATTGGAACTCTACTTTGAAACGTAAGTGTTGTTCTAGTATGGTCGATGAATCTCCACCTTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATACCTGTTTCTACCGGTCTTTATATTAATAATCCTTCTTCACCTGGTTCTCCTTCTGGATCCGATGTGAGCGAGTCCAGCGTACCTATTGTGAACTCCTCTCATGTTTATCGTCCGGTGCCGACGAGGACAGTTACGCTTCCGGTTCCTGTTCCGATTACGGTTCTACCTCCCGTAGAAACGACGTCGTCTTCTAAATCTTCAAAATCACCAAAATCTCCAAAATCAAATGATCCTCCAACTTCATTATCACTTTCACTTCCCGGAGTCGATTCTTCGTCGGAAGATTCAAACCGTGTGACTGAGCCGCCTGTGAAGAACTCTGCTCCACCGCCTCCTCCACCAGCACTGCCAAGTGCGATTCCTTTGATTCCGATAATGACGACAGCTGTACCCGTTTCTGTTCCGATGGCGGTTCCGATGATGCAGCAATTTAACGATCCGGCGACGGCGAGGGGATCGGGATCAGCGGTGCCGTTCAATTTTAGTGCGGAGTTGTTGACTGTGATGCAGGAAATGATAAGGACGGAAGTGAGAAGTTACATGGCGGGATTGGAGCAGCAGAATGGGATGTGTATTGCTGATGATGGATTTAGGAATGCTTCTGTGAAGCGAATTGGAATTAGCAGGATCGATTCGTAA 1047 0.4604 MNTPITRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCCSSMVDESPPLKRSVSAGAAIPVSTGLYINNPSSPGSPSGSDVSESSVPIVNSSHVYRPVPTRTVTLPVPVPITVLPPVETTSSSKSSKSPKSPKSNDPPTSLSLSLPGVDSSSEDSNRVTEPPVKNSAPPPPPPALPSAIPLIPIMTTAVPVSVPMAVPMMQQFNDPATARGSGSAVPFNFSAELLTVMQEMIRTEVRSYMAGLEQQNGMCIADDGFRNASVKRIGISRIDS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5730 348 Gene3D - 67 130 - -
Tpr2g5730 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Tpr2g5730 348 SMART sant 65 113 IPR001005 -
Tpr2g5730 348 SMART sant 13 62 IPR001005 -
Tpr2g5730 348 PANTHER MYB PROTEIN-RELATED 6 319 - -
Tpr2g5730 348 CDD SANT 68 111 IPR001005 -
Tpr2g5730 348 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Tpr2g5730 348 MobiDBLite consensus disorder prediction 194 249 - -
Tpr2g5730 348 MobiDBLite consensus disorder prediction 194 239 - -
Tpr2g5730 348 Gene3D - 13 65 - -
Tpr2g5730 348 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 6 319 - -
Tpr2g5730 348 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Tpr2g5730 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Tpr2g5730 348 Pfam Myb-like DNA-binding domain 17 74 - -
Tpr2g5730 348 CDD SANT 16 58 IPR001005 -
Tpr2g5730 348 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5730 Tpr-Chr2 66520977 66522683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5730 6 347 MYB Transcription Factor Family AT4G37260 48.257 3.43e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g5730 Myb_DNA-bind_6 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5730 K09422 - gmx:780556 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5730 2 66520977 66522683 Tpr4g3994 4 46423330 46424518 ECH
Tpr2g5730 2 66520977 66522683 Tpr2g5730 2 66520977 66522683 ECH
Tpr2g5730 2 66520977 66522683 Tpr4g1864 4 19514046 19515519 PCT
Tpr4g3994 4 46423330 46424518 Tpr2g5730 2 66520977 66522683 PCT