LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g5717	ATGTCTCATCGACAAAACCAAAATCAACAACCACTGTTAGAACAAGAAGAAGAAACCGCTTATGATTCATCGGAGAAGATAGTTATTATCGGAGATGAAGAATACGAAGCTGACGTGGACGCCGGAGTACGAATTCCACCATTTTCATGGAAAAAACTATGGTTATTCAGTGGTCCAGGTTTTCTAATGAGTATAGCTTTTCTGGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGTTACTCATTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGACTTCTTATTCAGTTATTGTCAGCAAGATTAGGTGTTGCTACTGGAAGACACTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGTCTAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTCTTATTGGTTCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTTTGAGTAATGGTTATGTTCCTCTTTGGGCTGGTGTTGTTATTACTGCTTTAGATTGTTTTATCTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTTATTGCTATAATGGCTCTCTCCTTTGCATGGATGTTTGGCGAAGCAAAGCCTGATGGTGTTGATGTTCTTGTTGGTATTTTGGTCCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGACAGGTTGACCCAAAAAAGAAAGGCCGTGTTCAAGAGGCTATTAATTACTACTCAATAGAGTCCACCATTGCGCTTGTTGTCTCCTTTGTGATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGGATCGGTCTCGTAAATGCAGGGCAGTACCTTCAAGAGAAGTATGGAGGTGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGGGGTTTTCTGAATTTGAAGTTGAAAAAATGGATAAGGGCATTGATTACACGGAGCTTTGCAATCGTCCCGACTATGATAGTTGCGCTTATATTTGATACCTCAGAGGAATCATTAGATGTTCTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATTCCCTTTGCACTGATTCCCTTGCTTTGTTTGGTATCGAAGGAACAAATAATGGGCACTTTCAAGATTGGCTCTGCCCTCAAGACCATTTCCTGGCTTGTGGCTGCACTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCATCTGAAGTGAGTGGAGCAGTGGTAACCGCTATTGTGTCTACCATAACTGCTGCATACGTTGCATTCATAGTTTACCTCATTTCAAGTGCCTTCGCATTTACACCTTGGAACAGTTTTACTCGACCAAAGACAGTAGCTTCCACGGAGAGTTGA	1539	0.4042	MSHRQNQNQQPLLEQEEETAYDSSEKIVIIGDEEYEADVDAGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWSRIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGYVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEAINYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWIRALITRSFAIVPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSALKTISWLVAALVIVINGYLLLEFFSSEVSGAVVTAIVSTITAAYVAFIVYLISSAFAFTPWNSFTRPKTVASTES*	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g5717	512	Pfam	Natural resistance-associated macrophage protein	74	435	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	Hamap	Divalent metal cation transporter MntH [mntH].	39	461	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	14	512	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	MobiDBLite	consensus disorder prediction	1	20	-	-
	Tpr2g5717	512	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	14	512	-	-
	Tpr2g5717	512	MobiDBLite	consensus disorder prediction	1	17	-	-
	Tpr2g5717	512	PRINTS	Natural resistance-associated macrophage protein signature	132	158	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	PRINTS	Natural resistance-associated macrophage protein signature	162	181	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	PRINTS	Natural resistance-associated macrophage protein signature	187	208	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	PRINTS	Natural resistance-associated macrophage protein signature	236	259	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	PRINTS	Natural resistance-associated macrophage protein signature	343	362	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	PRINTS	Natural resistance-associated macrophage protein signature	371	388	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	PRINTS	Natural resistance-associated macrophage protein signature	405	424	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr2g5717	512	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	51	429	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g5717	Tpr-Chr2	66345742	66349250	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g5717	5	498	Inorganic Solute Cotransporters	AT2G23150	80.200	0.0	796

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g5717	K21398		-	gmx:100789871	879.011

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g5717	2	66345742	66349250	Tpr2g5717	2	66345742	66349250	ECH
	Tpr2g5717	2	66345742	66349250	Tpr4g3980	4	46244777	46247900	PCT