Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5684 ATGAAGTTCAATCCTAGGGTTTCAAGCAGCCGTCGCAAGAGCCGCAAGGCTCATTTCACAGCCCCATCAAGCGTCCGTCGTGTCTTGATGAGCGCACCTCTCTCCGGCGACCTCCGATCCAAATACAACGTCCGTTCTCTCCCTATCCGTAAAGACGACGAAGTTCAGGTCGTTAGAGGAACATTCAAGGGACGTGAAGGAAAAGTTGTTCAAGTTTATCGTAAGAAATGGGTGATTCATATCGAACGTATAACACGTGAGAAGGTTAATGGTTCAACTGTTAATGTTGGTGTTAATCCTTCGAAATGTGTTATCACTAAGCTTCGTTTGGATAAGGATAGGAAATCTTTGCTTGATCGTAAGGCCAAGGGTCGTGCTGCTGCTGATAAGGAAAAGGGTACTAAGTTTGCTCCTGAAGACATTATGCAAAATGTTGATTAG 441 0.449 MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSLPIRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGVNPSKCVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFAPEDIMQNVD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5684 146 TIGRFAM rplX_A_E: ribosomal protein uL24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Tpr2g5684 146 Pfam KOW motif 51 82 IPR005824 -
Tpr2g5684 146 MobiDBLite consensus disorder prediction 120 146 - -
Tpr2g5684 146 MobiDBLite consensus disorder prediction 1 20 - -
Tpr2g5684 146 Gene3D - 1 143 IPR014722 -
Tpr2g5684 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Tpr2g5684 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Tpr2g5684 146 PANTHER 60S RIBOSOMAL PROTEIN L26-1 1 146 - -
Tpr2g5684 146 MobiDBLite consensus disorder prediction 120 137 - -
Tpr2g5684 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Tpr2g5684 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Tpr2g5684 146 SMART kow_9 48 75 IPR005824 -
Tpr2g5684 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 146 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5684 Tpr-Chr2 65890727 65891437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5684 1 146 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 87.671 5.44e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5684 K02898 - nnu:104590385 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5684 2 65890727 65891437 Tpr2g5684 2 65890727 65891437 ECH