Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5672 ATGGGTGCACCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCCGGAGTAGTCAAATACGGGGCTGGAAAATGGCGTACCATACTTACAGATCCGGATTTCAGTACCATTTTGCGTATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCACTTAAAAAGAACCTACCTCCCCCGAAAACGGAAAATAACAACCATACAACCTCGACTGCAATAGTTCAATATAATCCAGAAGTTGCAGCTCCTAAGCCGCTGGCAGTTTCTGGTGGAATATCGACCTCCAAAGAACAAATATCAAGATTGGACAACCTTATATTGGAGTCTATAGTTAAGTTGAAGGAGCCAAAGGGTTCTGACATGGCCGCCATTGCTGCTTATATAAAGGATCAATACCGGTCTCCACCAAACCTCATGAAATTACTGTCAACAAAACTGAAGCATATGGTGGCAGGTGGCAAATTAGTGAAGGCAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCTGAGAAAAGAAAAAGCTCTTCCTTGTTACTCCTGGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGTCAATGTTCTTTCACAATCCCAAATTGATGTCGAGCTCTTAAAAATGAGGGGTGTGACAGCTCAAGAGGTGGCAGCAGCAGCTGCAAAAGCAGTTGCAGAAGCAGAAGCTGCCATTGCTGTGGCTGAGGCAGCAGCGAGGGAAGCAGAGACTATGGAAGCAGAAGCAGAGGCCGCACGAGTGTTTGCAAAAGCAGCAATGAAGGCACTGAAATGTAGAAGACTTAATATTTGA 882 0.441 MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKTENNNHTTSTAIVQYNPEVAAPKPLAVSGGISTSKEQISRLDNLILESIVKLKEPKGSDMAAIAAYIKDQYRSPPNLMKLLSTKLKHMVAGGKLVKANHKYRIATNSTKTSEKRKSSSLLLLEGRPKDSPKAEKTDVNVLSQSQIDVELLKMRGVTAQEVAAAAAKAVAEAEAAIAVAEAAAREAETMEAEAEAARVFAKAAMKALKCRRLNI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5672 293 SUPERFAMILY "Winged helix" DNA-binding domain 115 195 IPR036390 -
Tpr2g5672 293 Gene3D - 115 198 IPR036388 -
Tpr2g5672 293 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr2g5672 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tpr2g5672 293 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 292 - -
Tpr2g5672 293 CDD SANT_TRF 6 57 - -
Tpr2g5672 293 Gene3D - 2 59 - -
Tpr2g5672 293 Coils Coil 241 275 - -
Tpr2g5672 293 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Tpr2g5672 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Tpr2g5672 293 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr2g5672 293 SMART sant 4 59 IPR001005 -
Tpr2g5672 293 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tpr2g5672 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr2g5672 293 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5672 Tpr-Chr2 65758275 65763748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5672 1 289 Single Myb Histone (SMH) Gene Family AT5G67580 52.041 1.16e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g5672 Linker_histone 4.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5672 K09422 - gmx:778165 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5672 2 65758275 65763748 Tpr4g3945 4 45820018 45826083 PCT