LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g5658	ATGAAGTCCTTTGAAAATATTTATGATACCATTAACCTAAAAAATCAAAATAGTAACATGTTGGGTTTCTCTGTCTCTCCTCAAATGAATATAAGTGTTCCATCCTTTGCTGCTGCTGCTACTGAAACAGTTCCAACAAGCTTTTATTATCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGATTGTATTCACCTTTGCCTATTAATATGCTTGATGGATCAACATATGGTATAGAAGCTCTTAGTAGATCACAATCACAAGCAATGGGATTTCCTCAATATGAATGTAATACCAAAGAAGCACTGCAACTAAACATGGATAGTATTTTCTACAACCAAACTTCATGGCATAATAAACCAAACAATCCAAATAATGTAAGTTATGTACAAGAGAGTACGAGTCTGTTGGAGAGTCTGAGGGAGCATCAGGAGCAACAAGTCTCGTATTACACCGTCTTAGGAAATCGTAATGTGATATTAGAAGGGTCGATGAAAAATCAGCTAAAAGATAGTTTCCAGCTCCCAAATATAGTTGAAGATGAAGTTTCTGGTCTTAAGAGATGGGTCTCAAGGGACATTCATGCTACTAATCATGCACAAGAGTCAAAATATGGGTTGACCATGAGTCCTACCTCACAATCTAGTTGTGTTACAAGTTCACAACAAACATCACTTACTGATTCTGTTTCCATTGATACAATGAAAAGGAAAAAGAATCAGAATCAAACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGATAACAGCTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGTTTATCTAGGAGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACTCGTATAAATTTTCCATTAGAAAATTATCAAAAGGAGCTTGAGGAAATGAAGAAAATGACTAGACAAGAATATGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACACAAGAAGAAGCAGGTGAAGCCTATGACATAGCTGCTATAAAATTCAGAGGAGCAAATGCTGTTACAAATTTTGACATAACAAAATATGATGTGGAAAAAATTATAGCAAGCAATAATCTTCTTAACAGTGAAGAAGCTAAGAGAAACAGAAAAATGGATGATTTAATTAACATTGAAGAAGCCATTAATCCAATGCAGAAGAGGTGCAAAATTCAATCATTCTCAATAGGTTTAGAAGAAATATATAATCAAGAAGTAGAGGAATATTCAAATAGAGTGTTACATGTATCAAATCCTTCTTCAATTGTGACAAGTTTGTGCAGCTCAAGAGAACAAAGTCCTGAAAACAGAACAAGCTTACCAATGCTGTTTGGAATGACTTCAACAGAATCAATGTCTTCATTTTCTTTGCCTCAAATGCCACTGTCTTTTTTTGCTGCTTGGAATGATGCAGCATAG	1641	0.3626	MKSFENIYDTINLKNQNSNMLGFSVSPQMNISVPSFAAAATETVPTSFYYHPTPLHNYGFYYGLEGEHVGLYSPLPINMLDGSTYGIEALSRSQSQAMGFPQYECNTKEALQLNMDSIFYNQTSWHNKPNNPNNVSYVQESTSLLESLREHQEQQVSYYTVLGNRNVILEGSMKNQLKDSFQLPNIVEDEVSGLKRWVSRDIHATNHAQESKYGLTMSPTSQSSCVTSSQQTSLTDSVSIDTMKRKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASNNLLNSEEAKRNRKMDDLINIEEAINPMQKRCKIQSFSIGLEEIYNQEVEEYSNRVLHVSNPSSIVTSLCSSREQSPENRTSLPMLFGMTSTESMSSFSLPQMPLSFFAAWNDAA*	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g5658	546	Gene3D	AP2/ERF domain	361	421	IPR036955	GO:0003700\|GO:0006355
	Tpr2g5658	546	Gene3D	AP2/ERF domain	258	327	IPR036955	GO:0003700\|GO:0006355
	Tpr2g5658	546	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	16	209	-	-
	Tpr2g5658	546	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	214	459	-	-
	Tpr2g5658	546	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	214	459	-	-
	Tpr2g5658	546	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	16	209	-	-
	Tpr2g5658	546	CDD	AP2	360	421	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	ProSiteProfiles	AP2/ERF domain profile.	361	419	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	CDD	AP2	258	325	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	Pfam	AP2 domain	362	411	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	Pfam	AP2 domain	259	317	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	ProSiteProfiles	AP2/ERF domain profile.	259	325	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	SMART	rav1_2	361	425	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	SMART	rav1_2	259	331	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	PRINTS	Ethylene responsive element binding protein signature	260	271	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	PRINTS	Ethylene responsive element binding protein signature	401	421	IPR001471	GO:0003700\|GO:0006355
	Tpr2g5658	546	SUPERFAMILY	DNA-binding domain	258	327	IPR016177	GO:0003677
	Tpr2g5658	546	SUPERFAMILY	DNA-binding domain	360	420	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g5658	Tpr-Chr2	65586728	65590690	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g5658	57	545	AP2-EREBP Transcription Factor Family	AT4G37750	45.000	1.13e-130	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Tpr2g5658		AP2	3.8e-13	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g5658	2	65586728	65590690	Tpr4g3930	4	45634777	45638449	PCT