Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5655 ATGGGAAGAGCTCCTTGTTGTGACAAAGCTAATGTCAAAAAAGGTCCATGGTCACCTGAAGAAGATGCAAAACTCAAATCTTACATAGAACAAAATGGTACTGGTGGAAATTGGATTGCTCTGCCTCAAAAGATAGGACTTAAGAGATGTGGGAAAAGTTGTCGTCTAAGATGGCTAAATTATCTTCGACCAAATATTAAACATGGCGGTTTCTCGGAGGAAGAAGATGATATTATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATCATAGCGGCACAACTACCAGGACGAACAGACAATGATATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTCCTTGGGAAACAAAGGAAGGAGCAACAAGCCCAAGCTCAAGCACAAGCTCGCCGAGTTAACATCATGAAACAAGAGATGAAAAGAGAAACAGATCATCATAATTTGATGGTAGCCGCGGCTTCCGGTGTTAATAATATGAGTACTCAAGCTCCTTATTGGCCAGCTGAGTATTCTATTAATCCCATGCCGGTTTCAAATTCATCCATAACTGACTATGATCTGAGCAATCAAACATCCTTCACAAGCTTGCTTCATCCAACCATAATGAACATGACAAACCCTTTGGCCATGGAGAGTAATGCAATTACAAACAATGGTGGAAATTGTCAACCATCACAAATATTTCAAGGGTTTGAAAATTTTCCAAGTGATTTAAGTGATTTTCTATGTGTGAACCAACAACAAATAATGGATAAAACAATTGATGGTTTTTATGGAATGGAATCTATAGACATAAGCAATGGTGGTAGCACAATCACAACAACATCAACAGAAAGCACTAGTTGGGGAGATATGAACTCTTTGGTTTACTCACCTTTGGTTTCTGACTATGATGGTTGTTGCCAACAAGGTTCAATTCCTCAAGATGTTGTTGCTTTTGAGGAATCTAGGTATTTTGGAATGCAAATGCAATAA 987 0.3891 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQAQAQARRVNIMKQEMKRETDHHNLMVAAASGVNNMSTQAPYWPAEYSINPMPVSNSSITDYDLSNQTSFTSLLHPTIMNMTNPLAMESNAITNNGGNCQPSQIFQGFENFPSDLSDFLCVNQQQIMDKTIDGFYGMESIDISNGGSTITTTSTESTSWGDMNSLVYSPLVSDYDGCCQQGSIPQDVVAFEESRYFGMQMQ* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5655 328 CDD SANT 71 113 IPR001005 -
Tpr2g5655 328 Gene3D - 70 148 - -
Tpr2g5655 328 SMART sant 67 115 IPR001005 -
Tpr2g5655 328 SMART sant 13 64 IPR001005 -
Tpr2g5655 328 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tpr2g5655 328 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr2g5655 328 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tpr2g5655 328 CDD SANT 16 62 IPR001005 -
Tpr2g5655 328 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr2g5655 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tpr2g5655 328 Coils Coil 122 146 - -
Tpr2g5655 328 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tpr2g5655 328 PANTHER OS09G0431300 PROTEIN 215 309 - -
Tpr2g5655 328 PANTHER OS09G0431300 PROTEIN 1 219 - -
Tpr2g5655 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tpr2g5655 328 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 215 309 - -
Tpr2g5655 328 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 219 - -
Tpr2g5655 328 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5655 Tpr-Chr2 65508066 65509924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5655 1 295 MYB Transcription Factor Family AT3G49690 47.879 4.08e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g5655 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5655 K09422 - gmx:106795158 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5655 2 65508066 65509924 Tpr4g3927 4 45573293 45574869 PCT