Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5653 ATGCCCCCACAGAAAAGTCTTGTACTCATTCTCCACCTCCCCCCTCTCTTTAAAACCATACCTTATATCCATTTTTTCATACAAAACATTTCAACCTTAAAACACCTCCTTCATAGTTATTTTTTTTTTCTCAATTATCAAATGGGGTTTAATGATCAAAATTCCCTTCATCTTGTTCTAGGCTTATCTTTGAATACTTCTACTACTCCAAAACAAATAACCACCACCACCACCACCACCACCACCACCACCGTAAAGAATCCCTATTCCTCCACCGAGCCATCCTTAACGTTAGGACTCTCCCCAGAGAGTCCTAACATCCATAGAATTAACCAAACTTCTTCACCTCATAGTGTTGTTGTTTCATCTTTCTCAAATGGGAGAGTCTTGCAAGTGAAGAGAGAAAGAGAGGAAGAAGAAGATCAAGAGGTAGAAGAAGAGAGAGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACTAATGCTAGAAAGAAACTTAGGCTTACCAAAGAACAATCTTTACTTTTGGAAGAAAGCTTCAAATTGCAAAGCACTCTTAATCCGAAAGAAAAACAAGCTTTAGCAAAGCAGTTGAATCTAAGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCAAGAACAAAGCTGAAACAAACGGAGGTTGATTGCGAATTTTTGAAGAAATGTTGTGAAACGTTAACGGACGAAAATAGGAGATTAAAGAAAGAGTTACAAGAGCTGAAATCATTGAAGCAAGCACAACCTTTATACATGCCCATGCCTGCAGCTACACTCTCCATGTGCCCCTCTTGCGACCGGCTCGGCCGCGTCGCGGATGGTGGCGGTTCGAATAAGAAGATCACTGCCTTCACCATGGCTCCCAATACTCACTTCTATAATCCTTTCAATAATCCTTCCGCAGCTTGTTAA 939 0.41 MPPQKSLVLILHLPPLFKTIPYIHFFIQNISTLKHLLHSYFFFLNYQMGFNDQNSLHLVLGLSLNTSTTPKQITTTTTTTTTTTVKNPYSSTEPSLTLGLSPESPNIHRINQTSSPHSVVVSSFSNGRVLQVKREREEEEDQEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKQAQPLYMPMPAATLSMCPSCDRLGRVADGGGSNKKITAFTMAPNTHFYNPFNNPSAAC* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5653 312 MobiDBLite consensus disorder prediction 73 97 - -
Tpr2g5653 312 Coils Coil 226 256 - -
Tpr2g5653 312 PANTHER - 57 312 - -
Tpr2g5653 312 SMART halz 220 263 IPR003106 GO:0006355|GO:0043565
Tpr2g5653 312 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677
Tpr2g5653 312 SUPERFAMILY Homeodomain-like 158 221 IPR009057 -
Tpr2g5653 312 MobiDBLite consensus disorder prediction 146 166 - -
Tpr2g5653 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 57 312 - -
Tpr2g5653 312 MobiDBLite consensus disorder prediction 132 166 - -
Tpr2g5653 312 SMART HOX_1 162 224 IPR001356 GO:0003677
Tpr2g5653 312 CDD homeodomain 164 221 IPR001356 GO:0003677
Tpr2g5653 312 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981|GO:0006355
Tpr2g5653 312 Gene3D - 157 225 - -
Tpr2g5653 312 Pfam Homeobox associated leucine zipper 220 255 IPR003106 GO:0006355|GO:0043565
Tpr2g5653 312 Pfam Homeodomain 164 218 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5653 Tpr-Chr2 65468888 65470721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5653 48 312 Homeobox Transcription Factor Family AT4G37790 56.794 3.79e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g5653 Homeodomain 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5653 K09338 - gmx:100795135 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5653 2 65468888 65470721 Tpr5g2610 5 48288407 48290633 PCT