Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5645 ATGAAGGCAAGTGACTTCTCTCACATAATTAGGAGAGAAAGTGAGCATTTACTCAAAATGGATATGTCAGCTAGCAAAATGACATCAACTGATGAGTCATGGACAACTTGGTTATGTGATTTGGAACCAGAAGATTACAATTTCATGGATGACATTAACATAACCCCTTTGCCAGAAGAACCTGAAAACTTGCAACAAACTTTATCTAGTGGTAGCCATTGTTCTCAAACAACCTCAAGCACTATGAGTAATTCCTCAGGTGATGTTGTTAACAGCTTTGAGGAAAGGCCTACAAAGATACTCAAAACTACCCCTTCAAACACAGGGTACCCTACACAAAAGAAAGATCCTTCCCATTCCTATTTTCTTTGTTTTAACAATGAAAATCCAGAAACAGAACCAAATCCAATATTGAACATTGATTCATCCTTGAAACCAAAAGCCCAGATTTTGAATTACGATGGGAAATCAGAAAATAAAAAAAAGGAACCTAAACGCAATATTCAAGAGAGTAAGAAAACTGATTCAGTTACAAGAAATGCTAAAGATCACATAATTGCTGAGAGAAAAAGAAGAGAAAAAATTAGTCAACAGTTCATAGCTCTTTCAGCACTTATTCCAGACTTAAAAAAGATGGATAAAGCTTCTGTATTAGCAGATGCTATAACCCATGTGAAACAGCTTCAAGAACAAGTGAAAGTACTAGAAGAAAAGAACCAAAGGATAAACAAAGAATCTGTGGTATATGTTGAGAAGACAAAATCATGTTCTTCAGATGAAGATGTCTCAGACAACACTTCATCAAATTCTGAGTATGGTAATTGCTGTCATCCCTCAAGGTCACTGCCAGAAGTTGAAGCAAGGGTGTCAGAGAAGAACGTGCTGATAAGAATCCATTGTGAGAAACAAAAGGGTGTGTTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATCGGTCACAAGTAGTAGTACATTGCAATTTGGAACCACCAAACTTGACATAACCATCATTGCCGAGATGGATGAGGAGTTCAGCCTAAGTGTGCAGGAGCTAGCTAGAAACCTTCAAGTTGGACTATTGCAATTCATGTCATTGTAG 1104 0.3705 MKASDFSHIIRRESEHLLKMDMSASKMTSTDESWTTWLCDLEPEDYNFMDDINITPLPEEPENLQQTLSSGSHCSQTTSSTMSNSSGDVVNSFEERPTKILKTTPSNTGYPTQKKDPSHSYFLCFNNENPETEPNPILNIDSSLKPKAQILNYDGKSENKKKEPKRNIQESKKTDSVTRNAKDHIIAERKRREKISQQFIALSALIPDLKKMDKASVLADAITHVKQLQEQVKVLEEKNQRINKESVVYVEKTKSCSSDEDVSDNTSSNSEYGNCCHPSRSLPEVEARVSEKNVLIRIHCEKQKGVLMNIIQEIENLHLSVTSSSTLQFGTTKLDITIIAEMDEEFSLSVQELARNLQVGLLQFMSL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5645 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Tpr2g5645 367 PANTHER BHLH TRANSCRIPTION FACTOR 29 362 - -
Tpr2g5645 367 MobiDBLite consensus disorder prediction 154 181 - -
Tpr2g5645 367 Gene3D - 178 249 IPR036638 GO:0046983
Tpr2g5645 367 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 29 362 - -
Tpr2g5645 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 246 IPR036638 GO:0046983
Tpr2g5645 367 SMART finulus 185 234 IPR011598 GO:0046983
Tpr2g5645 367 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983
Tpr2g5645 367 Coils Coil 218 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5645 Tpr-Chr2 65365044 65367448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5645 94 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.403 1.20e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g5645 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5645 - - lang:109348843 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5645 2 65365044 65367448 Tpr2g5645 2 65365044 65367448 ECH
Tpr2g5645 2 65365044 65367448 Tpr4g3915 4 45385840 45390011 PCT