Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5644 ATGGATAAATTAAACACATCTTCAAACACATCATCAACTAGCTGGTTATCTAATATGCTCTTTGAAGAAATTGACATAGAGGGTTGTGGTGATTTGTTTCAACAATGTGAACAAAATTTGTTTGGTGTTGAAGAATTTCTTACACATGACATAGCAAGTGTTCTTCAACAAGATGAAATTTTACTAGAACAATCTGAAAGCTATTCTATGGAAAGACCAAACAAAAAGTTGAAACCAAACACTATTTTGCAAGATGTTTCCCCTGTTTCTTCTCCTTCTTCAACAACTTCTCAGATTCTGTCTTTTGACTGTACCTTAAACACTACAAAACAGAACGAGGTTGTTCCATTGTCATCACAAAAACATGTTCAATTACCTCAAAATCGAGGGAGTAAGAGGTCTGTGGCACATAATCAGGACCACATCATAGCTGAGAGAAAGAGAAGAGAGAAACTTAGCCAATGCTTAATTGCTCTAGCTGCTCTTGTTCCTGGTTTGAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAGTAAAGTATGTGAAAGAGCTTCAAGAACGTTTGAAGGTATTAGAGGAAAAGAACAAGAATAGTAATAGTACTAGTCCTGTTGAGTGTGTAGTGACAATGAATAATGGACCACAACTAAGTTACGATTCATCAAGCAATGATGAATCTGAAGCTGAAGCTGGTAGTGGTAATAATGAAGTTCTTGAACCCCATGTGGACGCAAGAATCTTGGACAAGGACGTACTCATAAGGATTCACTGCAAAAAGCAAAAGGGTCTTTTGCTCAAAGTATTGTTTGAGATTCAAAAGCTTAATCTCTTTGTTGTTAATAGCAGTGTCCTACCTTTTGGGGATTCTATCCTTGACATAACCATCGTTGCTCAGATGGGAACGGGGTACAAATTGACAAGAAATGGCCTTATAAAAAGCCTACGCGTGGCTGCATTAAGATACATGTCATAA 975 0.3754 MDKLNTSSNTSSTSWLSNMLFEEIDIEGCGDLFQQCEQNLFGVEEFLTHDIASVLQQDEILLEQSESYSMERPNKKLKPNTILQDVSPVSSPSSTTSQILSFDCTLNTTKQNEVVPLSSQKHVQLPQNRGSKRSVAHNQDHIIAERKRREKLSQCLIALAALVPGLKKMDKASVLGDAVKYVKELQERLKVLEEKNKNSNSTSPVECVVTMNNGPQLSYDSSSNDESEAEAGSGNNEVLEPHVDARILDKDVLIRIHCKKQKGLLLKVLFEIQKLNLFVVNSSVLPFGDSILDITIVAQMGTGYKLTRNGLIKSLRVAALRYMS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5644 324 Coils Coil 175 202 - -
Tpr2g5644 324 SMART finulus 142 191 IPR011598 GO:0046983
Tpr2g5644 324 PANTHER BHLH TRANSCRIPTION FACTOR 62 320 - -
Tpr2g5644 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Tpr2g5644 324 MobiDBLite consensus disorder prediction 70 90 - -
Tpr2g5644 324 Gene3D - 126 201 IPR036638 GO:0046983
Tpr2g5644 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 198 IPR036638 GO:0046983
Tpr2g5644 324 Pfam Helix-loop-helix DNA-binding domain 140 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5644 Tpr-Chr2 65354805 65360005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5644 73 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.977 2.71e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g5644 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5644 - - mtr:MTR_5g014560 323.939