Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5638 ATGGCTACAGATATTGGCCTTCTTTCCAATATGACTCAGATCCAAAAATCTTCACAATCACAATCTCAACAACATCAACCAAACCCTAACTCCAACACAACCATAGCCTCACAATCACCATCAACTTGGATGTGGAACCCTAAACATCACCAACACCAACAAAATGATGAAGAAGAAGATGAAGATTCATGGGAGGTAAGAGCTTTTGCTGAAGATACAAGGAACATCATGAACACAACATGGCCACCAAGATCTTACTCTTGTACTTTTTGTAGAAGAGAGTTCAGGTCAGCACAGGCTCTCGGCGGTCACATGAATGTTCACCGCAGAGACCGTGCTCGCCTGCATCAAAATCAACCACCATTAAATTCCTCTCATCATCATCCTTCGTATATCCCTCCTCAAGAACTTGTTGCAAATGCTGGATTGTGCTTTCTTTACCATTTACCAAACCCTAATAGTAATAATGTTATTGCTTCTTCTTTCAATGGTTCTAATGGAGAATCTCCTTCAACTCTTCTTTCTATTTCATCATCAACATCTTATCCACCAAATAATTTGATGATGCAAATGCAAATGCAAACTTGTTCTCCTCCTCCATCTTTTAATTTTCAGGCTAATTCAGCTAGGAATATGATCAATCATAGCATTTCTTCTTTTTCTAGCAAAGTGGATCAACAAACTGCTATTTGCACCTCCATAGATGATAATAATGGTCATGGAATTGAAGAGCTTGATCTTGAGCTTCGATTGGGAAACAAGCCATGA 768 0.3906 MATDIGLLSNMTQIQKSSQSQSQQHQPNPNSNTTIASQSPSTWMWNPKHHQHQQNDEEEDEDSWEVRAFAEDTRNIMNTTWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSHHHPSYIPPQELVANAGLCFLYHLPNPNSNNVIASSFNGSNGESPSTLLSISSSTSYPPNNLMMQMQMQTCSPPPSFNFQANSARNMINHSISSFSSKVDQQTAICTSIDDNNGHGIEELDLELRLGNKP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5638 255 MobiDBLite consensus disorder prediction 1 41 - -
Tpr2g5638 255 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Tpr2g5638 255 SUPERFAMILY beta-beta-alpha zinc fingers 83 113 IPR036236 -
Tpr2g5638 255 Gene3D Classic Zinc Finger 74 131 - -
Tpr2g5638 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Tpr2g5638 255 Pfam C2H2-type zinc finger 86 110 - -
Tpr2g5638 255 PANTHER OS07G0101800 PROTEIN 44 252 - -
Tpr2g5638 255 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 44 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5638 Tpr-Chr2 65283076 65284356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5638 41 255 C2H2 Transcription Factor Family AT4G17810 35.780 7.48e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g5638 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5638 - - lja:Lj2g3v1984740.1 225.328