LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g5636	ATGGAATCGCGTGAAGCAAATAACGAGCATGAAACACAACAACAACCACGACCACCACCTCTTCAACATCAGTTTCCTCGTAACCTTCAAACTGCAACTATGGTTCTGGTGGGTCCCAATCTGTTTACAAACAGCACCGTTCCCACAACCATGATGACACCTGTCACTGCTCAGTTTCCTCCGTTCAACATGAACATTCACCCTTCTCCTCGTGAGAATTTCAACAACAACATCAATGATATTGTAACTGTACCTCAAACTGCACCATCCACTACCTTGATGCCATGCATGACGGTGGCGGGAGGTTCTTCCTCTGTCTTTCCCTCTGCCTCTGACTCCAGTTCGGCTAAGAGGAAGAGGGGAAGGCCGAGGAAGTATTTTGGTGATGGTGAGGTTGATTCTGGCTCCGGCTCGGGTCAAGCTCAAGCTGCTGTTGTTGCTCCTCCTCCTGCTACTGCTACTGCAGTTACTTCTCCTGATTCTTCTGCGAAGAGTGCCAGAGGAAGAGGAAGGCCTCGTGGCTCTTTTAAGCAGAAGAATGTGATTGGACTTGCTGGTACATGTTTCACTCCGTATGTGATCATTGTGAATCCTGGGGAGGACATTGTTGCGAAACTTACGGCTGCTTGTCGCGGAGGACCTAATTCTGAGATATGCATTTTTTCTGCCCATGGTTTGGTTAGCACTGTTGCCCTTCATCATTTGGAGAAAATCGCTACTTATGAGGGAACATTTGAAATTGTATCCCTCTCAGGGACCTTGGCATCTGAGAACAACAATGGTGGTAAAAGAATGGGTAGCTGGAAGGTATCTCTATGTGGGGGTCGTGATGCACGCATTTGGGGAGGTGTGGTTGCTAATAAGCTTATTGCGGCATCGTCTGTTAAGGTCATATTGGGTAGTTTTACTGTGGATGGAAAAAAGGCTAGCTCAAGTAACTGGAATTCTGGGCCTTCTTCAGCGCCATCGTCCCAATTTGCTGCTTTTGGGACTCCAACCGGCGCTATGTCTCAAGGGCATTCATGTGATGAGTCCTCTGGTGACAATGACGACAACCCTTTTATTCATGGACCATCTGGAGTCTACAACAATGCTGAGCAGCCTATTCCCAACTTGGCGGGGTACCAGCAGATGTGGGCTCGCCATACTCAGCAGTGA	1158	0.4827	MESREANNEHETQQQPRPPPLQHQFPRNLQTATMVLVGPNLFTNSTVPTTMMTPVTAQFPPFNMNIHPSPRENFNNNINDIVTVPQTAPSTTLMPCMTVAGGSSSVFPSASDSSSAKRKRGRPRKYFGDGEVDSGSGSGQAQAAVVAPPPATATAVTSPDSSAKSARGRGRPRGSFKQKNVIGLAGTCFTPYVIIVNPGEDIVAKLTAACRGGPNSEICIFSAHGLVSTVALHHLEKIATYEGTFEIVSLSGTLASENNNGGKRMGSWKVSLCGGRDARIWGGVVANKLIAASSVKVILGSFTVDGKKASSSNWNSGPSSAPSSQFAAFGTPTGAMSQGHSCDESSGDNDDNPFIHGPSGVYNNAEQPIPNLAGYQQMWARHTQQ*	386

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g5636	385	MobiDBLite	consensus disorder prediction	104	174	-	-
	Tpr2g5636	385	CDD	DUF296	190	302	IPR005175	-
	Tpr2g5636	385	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	48	352	IPR039605	GO:0003680
	Tpr2g5636	385	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8	48	352	-	-
	Tpr2g5636	385	Pfam	AT hook motif	117	128	IPR017956	GO:0003677
	Tpr2g5636	385	Pfam	AT hook motif	167	177	IPR017956	GO:0003677
	Tpr2g5636	385	MobiDBLite	consensus disorder prediction	1	22	-	-
	Tpr2g5636	385	SMART	AT_hook_2	166	178	IPR017956	GO:0003677
	Tpr2g5636	385	SMART	AT_hook_2	117	129	IPR017956	GO:0003677
	Tpr2g5636	385	Gene3D	-	191	314	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g5636	Tpr-Chr2	65257888	65260051	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g5636	97	364	AT-hook Motif Nuclear Localized (AHL) Family	AT2G33620	35.231	3.21e-32	122

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g5636	-		-	cam:101504328	259.225

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