Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5636 ATGGAATCGCGTGAAGCAAATAACGAGCATGAAACACAACAACAACCACGACCACCACCTCTTCAACATCAGTTTCCTCGTAACCTTCAAACTGCAACTATGGTTCTGGTGGGTCCCAATCTGTTTACAAACAGCACCGTTCCCACAACCATGATGACACCTGTCACTGCTCAGTTTCCTCCGTTCAACATGAACATTCACCCTTCTCCTCGTGAGAATTTCAACAACAACATCAATGATATTGTAACTGTACCTCAAACTGCACCATCCACTACCTTGATGCCATGCATGACGGTGGCGGGAGGTTCTTCCTCTGTCTTTCCCTCTGCCTCTGACTCCAGTTCGGCTAAGAGGAAGAGGGGAAGGCCGAGGAAGTATTTTGGTGATGGTGAGGTTGATTCTGGCTCCGGCTCGGGTCAAGCTCAAGCTGCTGTTGTTGCTCCTCCTCCTGCTACTGCTACTGCAGTTACTTCTCCTGATTCTTCTGCGAAGAGTGCCAGAGGAAGAGGAAGGCCTCGTGGCTCTTTTAAGCAGAAGAATGTGATTGGACTTGCTGGTACATGTTTCACTCCGTATGTGATCATTGTGAATCCTGGGGAGGACATTGTTGCGAAACTTACGGCTGCTTGTCGCGGAGGACCTAATTCTGAGATATGCATTTTTTCTGCCCATGGTTTGGTTAGCACTGTTGCCCTTCATCATTTGGAGAAAATCGCTACTTATGAGGGAACATTTGAAATTGTATCCCTCTCAGGGACCTTGGCATCTGAGAACAACAATGGTGGTAAAAGAATGGGTAGCTGGAAGGTATCTCTATGTGGGGGTCGTGATGCACGCATTTGGGGAGGTGTGGTTGCTAATAAGCTTATTGCGGCATCGTCTGTTAAGGTCATATTGGGTAGTTTTACTGTGGATGGAAAAAAGGCTAGCTCAAGTAACTGGAATTCTGGGCCTTCTTCAGCGCCATCGTCCCAATTTGCTGCTTTTGGGACTCCAACCGGCGCTATGTCTCAAGGGCATTCATGTGATGAGTCCTCTGGTGACAATGACGACAACCCTTTTATTCATGGACCATCTGGAGTCTACAACAATGCTGAGCAGCCTATTCCCAACTTGGCGGGGTACCAGCAGATGTGGGCTCGCCATACTCAGCAGTGA 1158 0.4827 MESREANNEHETQQQPRPPPLQHQFPRNLQTATMVLVGPNLFTNSTVPTTMMTPVTAQFPPFNMNIHPSPRENFNNNINDIVTVPQTAPSTTLMPCMTVAGGSSSVFPSASDSSSAKRKRGRPRKYFGDGEVDSGSGSGQAQAAVVAPPPATATAVTSPDSSAKSARGRGRPRGSFKQKNVIGLAGTCFTPYVIIVNPGEDIVAKLTAACRGGPNSEICIFSAHGLVSTVALHHLEKIATYEGTFEIVSLSGTLASENNNGGKRMGSWKVSLCGGRDARIWGGVVANKLIAASSVKVILGSFTVDGKKASSSNWNSGPSSAPSSQFAAFGTPTGAMSQGHSCDESSGDNDDNPFIHGPSGVYNNAEQPIPNLAGYQQMWARHTQQ* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5636 385 MobiDBLite consensus disorder prediction 104 174 - -
Tpr2g5636 385 CDD DUF296 190 302 IPR005175 -
Tpr2g5636 385 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 352 IPR039605 GO:0003680
Tpr2g5636 385 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 48 352 - -
Tpr2g5636 385 Pfam AT hook motif 117 128 IPR017956 GO:0003677
Tpr2g5636 385 Pfam AT hook motif 167 177 IPR017956 GO:0003677
Tpr2g5636 385 MobiDBLite consensus disorder prediction 1 22 - -
Tpr2g5636 385 SMART AT_hook_2 166 178 IPR017956 GO:0003677
Tpr2g5636 385 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Tpr2g5636 385 Gene3D - 191 314 - -
Tpr2g5636 385 ProSiteProfiles PPC domain profile profile. 186 324 IPR005175 -
Tpr2g5636 385 SUPERFAMILY AF0104/ALDC/Ptd012-like 188 303 - -
Tpr2g5636 385 Pfam Plants and Prokaryotes Conserved (PCC) domain 191 303 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5636 Tpr-Chr2 65257888 65260051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5636 97 364 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 35.231 3.21e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5636 - - cam:101504328 259.225