Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5630 ATGGGGTTTAATGATCAAAATTCCCTTCATCTTGTTCTAGGCTTATCTTTGAATACTTCTACTACTCCAAAACAAATAACCACCACCACCACCACAGTAAAGAATCCCTATTCCTCCACCGAGCCATCCTTAACGTTAGGACTCTCTCCAGAGAGTCCTAACATCCATAGAATTAACCAAACTTCTTCACCTCATAGTGTTGTTGTTTCATCTTTCTCAAATGGGAGAGTCTTGCAAGTGAAGAGAGAAAGAGAGGAAGAAGAAGATCAAGAGGTAGAAGAAGAGAGAGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACTAACGCTAGAAAGAAACTTAGGCTTACCAAAGAACAATCTTTACTTTTGGAAGAAAGCTTCAAATTGCAAAGCACTCTCAATCCGAAAGAAAAACAAGCTTTAGCAAAGCAGTTGAATCTAAGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCAAGAACAAAGCTGAAACAAACGGAGGTTGATTGCGAATTTTTGAAGAAATGTTGTGAAACGTTAACGGACGAAAATAGGAGATTAAAGAAAGAGTTACAAGAGCTGAAATCATTGAAGCAAGCACAACCTTTATACATGCCCATGCCTGCAGCTACACTCTCCATGTGCCCCTCTTGCGACCGGCTCGGCCGCGTCGCGGATGGTGGCGGTTCGAATAAGAAGATCACTGCCTTCACCATGGCTCCCAATACTCACTTCTATAATCCTTTCAATAATCCTTCCGCAGCTTGTTAA 783 0.4176 MGFNDQNSLHLVLGLSLNTSTTPKQITTTTTTVKNPYSSTEPSLTLGLSPESPNIHRINQTSSPHSVVVSSFSNGRVLQVKREREEEEDQEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKQAQPLYMPMPAATLSMCPSCDRLGRVADGGGSNKKITAFTMAPNTHFYNPFNNPSAAC* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5630 260 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 10 260 - -
Tpr2g5630 260 SUPERFAMILY Homeodomain-like 105 169 IPR009057 -
Tpr2g5630 260 Coils Coil 174 204 - -
Tpr2g5630 260 Pfam Homeobox associated leucine zipper 168 203 IPR003106 GO:0006355|GO:0043565
Tpr2g5630 260 PANTHER - 10 260 - -
Tpr2g5630 260 MobiDBLite consensus disorder prediction 80 114 - -
Tpr2g5630 260 MobiDBLite consensus disorder prediction 94 114 - -
Tpr2g5630 260 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677
Tpr2g5630 260 MobiDBLite consensus disorder prediction 26 54 - -
Tpr2g5630 260 SMART HOX_1 110 172 IPR001356 GO:0003677
Tpr2g5630 260 CDD homeodomain 112 169 IPR001356 GO:0003677
Tpr2g5630 260 Gene3D - 105 173 - -
Tpr2g5630 260 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Tpr2g5630 260 SMART halz 168 211 IPR003106 GO:0006355|GO:0043565
Tpr2g5630 260 Pfam Homeodomain 112 166 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5630 Tpr-Chr2 65175555 65177338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5630 1 260 Homeobox Transcription Factor Family AT4G37790 57.343 4.16e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g5630 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5630 K09338 - gmx:100795135 290.426