Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5623 ATGATGGAAATTATGTCTCCTATCTATTTGCCTGAACTTGGAATGGAGGATCTCAACTTCTTGCACCAATACCCTATGGATTCTCTTGCATCGGATGCATTTGACAACTTTGGATTTCACTTTGACAACAACTACGAAACAACACCAAATTGTTTCCCAGTTGAAACTCATCAACCTAATGATAACTACGTTGCTCAAACAAGACCAACTAAGAAGATAAAGACATCGTCAACCAATCCTTCTTCCTATTCATCAACACCTCAACTCATTTCATTTGAACAATTCAATGCAACACCAATTGTTTCTAATAAGGAATTTTACGGCCTTGATTATTCCGATGTAAAGCCTAAAATCGAGAAAGGGTGTAGTAAAAACAAGGATTTTCCGGCAAATTATGATAATCGAGCGAATCAGACTAGAAATACAACTCAAGCTCAAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTCACTCGAAGTTTCATTGCTCTTTCGGCCATCGTTCCTGGCCTAAAGAAGATGGATAAAGCATCTGTATTGGGAGATGCAATCAAATATATGAAACAACTAAAAGCACGTTTACAAACTCTTGAGGAACAAGTTGAAGACAACAAAAAAGTTGGATCCACAGTTCAAGTCAAGAGATCTGTTATCTTCATTGATAATAATGACCATGATGACAACAACAAGAGGACACTTCTTCCTGAAATCGAAGTAAGAGTTTCAAGTAAAGATGTACTCATCAAGATTCAATGTGATAAACAAAGTGGACGTGCTGCTACGGTGTTGGGCCAATTAGAAAACCTTAATCTCATTGTTCAAAGTAGTAACTTTTTGCCCTTTGGAAACAACATGCTTGATGTAACTATTGTTGCTCAGATGAACAAGGAAAACTGTGTGACTGCAAAGGATCTCCTAGGAAGCATACGACAGGCTTTGATCAATTGA 954 0.3763 MMEIMSPIYLPELGMEDLNFLHQYPMDSLASDAFDNFGFHFDNNYETTPNCFPVETHQPNDNYVAQTRPTKKIKTSSTNPSSYSSTPQLISFEQFNATPIVSNKEFYGLDYSDVKPKIEKGCSKNKDFPANYDNRANQTRNTTQAQEHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLKARLQTLEEQVEDNKKVGSTVQVKRSVIFIDNNDHDDNNKRTLLPEIEVRVSSKDVLIKIQCDKQSGRAATVLGQLENLNLIVQSSNFLPFGNNMLDVTIVAQMNKENCVTAKDLLGSIRQALIN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5623 317 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Tpr2g5623 317 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 316 - -
Tpr2g5623 317 SMART finulus 149 198 IPR011598 GO:0046983
Tpr2g5623 317 Coils Coil 182 209 - -
Tpr2g5623 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 205 IPR036638 GO:0046983
Tpr2g5623 317 PANTHER BHLH TRANSCRIPTION FACTOR 2 316 - -
Tpr2g5623 317 Gene3D - 133 208 IPR036638 GO:0046983
Tpr2g5623 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5623 Tpr-Chr2 65066398 65069803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5623 2 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.294 2.11e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g5623 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5623 - - cam:101507557 342.813