Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5622 ATGAAGGCAAGTGACTTCTCTCACATAATTAGCATAATTAGGAGAGAAAGTGAGCATTTACTCAAAATGGATATGTCAGCTAGCAAAATGACATCAACTGATGAGTCATGGACAACTTGGTTATGTGATTTGGAACCAGAAGATTACAATTTCATGGATGACATTAACATAACCCCTTTGCCAGAAGAACCTGAAAACTTGCAACAAACTTTATCTAGTGGTAGCCATTGTTCTCAAACAACCTCAAGCACTATGAGTAATTCCTCAGGTGATGTTGTTAACAGCTTTGAGGAAAGGCCTACAAAGATACTCAAAACTACCCCTTCAAACACAGGGTACCCTACACAAAAGAAAGATCCTTCCCATTCCTATTTTCTTTGTTTTAACAATGAAAATCCAGAAACAGAACCAAATCCAATATTGAACATTGATTCATCCTTGAAACCAAAAGCCCAGATTTTGAATTACGATGGGAAATCAGAAAATAAAAAAAAGGAACCTAAACGCAATATTCAAGAGAGTAAGAAAACTGATTCAGTTACAAGAAATGCTAAAGATCACATAATTGCTGAGAGAAAAAGAAGAGAAAAAATTAGTCAACAGTTCATAGCTCTTTCAGCACTTATTCCAGACTTAAAAAAGATGGATAAAGCTTCTGTATTAGCAGATGCTATAACCCATGTGAAACAGCTTCAAGAACAAGTGAAAGTACTAGAAGAAAAGAACCAAAGGATAAACAAAGAATCTGTGGTATATGTTGAGAAGACAAAATCATGTTCTTCAGATGAAGATGTCTCAGACAACACTTCATCAAATTCTGAGTATGGTAATTGCTGTCATCCCTCAAGGTCACTGCCAGAAGTTGAAGCAAGGGTGTCAGAGAAGAACGTGCTGATAAGAATCCATTGTGAGAAACAAAAGGGTGTGTTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATCGGTCACAAGTAGTAGTACATTGCAATTTGGAACCACCAAACTTGACATAACCATCATTGCCGAGATGGATGAGGAGTTTAGCCTAAGTGTGCAGGAGCTAGCTAGAAACCTTCAAGTTGGACTCTTGCAATTCATGTCATTGTAG 1113 0.3693 MKASDFSHIISIIRRESEHLLKMDMSASKMTSTDESWTTWLCDLEPEDYNFMDDINITPLPEEPENLQQTLSSGSHCSQTTSSTMSNSSGDVVNSFEERPTKILKTTPSNTGYPTQKKDPSHSYFLCFNNENPETEPNPILNIDSSLKPKAQILNYDGKSENKKKEPKRNIQESKKTDSVTRNAKDHIIAERKRREKISQQFIALSALIPDLKKMDKASVLADAITHVKQLQEQVKVLEEKNQRINKESVVYVEKTKSCSSDEDVSDNTSSNSEYGNCCHPSRSLPEVEARVSEKNVLIRIHCEKQKGVLMNIIQEIENLHLSVTSSSTLQFGTTKLDITIIAEMDEEFSLSVQELARNLQVGLLQFMSL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5622 370 MobiDBLite consensus disorder prediction 156 184 - -
Tpr2g5622 370 Pfam Helix-loop-helix DNA-binding domain 187 232 IPR011598 GO:0046983
Tpr2g5622 370 Coils Coil 221 248 - -
Tpr2g5622 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 249 IPR036638 GO:0046983
Tpr2g5622 370 MobiDBLite consensus disorder prediction 157 184 - -
Tpr2g5622 370 PANTHER BHLH TRANSCRIPTION FACTOR 32 365 - -
Tpr2g5622 370 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 32 365 - -
Tpr2g5622 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Tpr2g5622 370 Gene3D - 181 252 IPR036638 GO:0046983
Tpr2g5622 370 SMART finulus 188 237 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5622 Tpr-Chr2 65046917 65049308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5622 97 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.403 1.34e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g5622 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5622 - - lang:109348843 328.561