Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5621 ATGGATAAATTAAACACATCTTCAAACACATCATCAACTAGCTGGTTATCTAATATGCTCTTTGAAGAAATTGACATAGAGGGTTGTGGTGATTTGTTTCAACAATGTGAACAAAATTTGTTTGGTGATGAAGAATTTCTTACACATGACATAGCAAGTGTTCTTCAACAAGATGAAATTTTACTAGAACAATCTGAAAGCTATTCTATGGAAAGACCAAACAAAAAGTTGAAACCAAACACTATTTTGCAAGATGTTTCCCCTGTTTCTCCTTCTTCAACAACTTCTCAGATTCTTTCTTTTGACTGTACCTTAAACACTACAAAACAGAACGAGGTTGTTCCATTGTCATCACAAAAACATGTTCAATTACCTCAAAATCGAGGGAGTAAGAGGTCTGTGGCACATAATCAGGACCACATCATAGCTGAGAGAAAGAGAAGAGAGAAACTTAGCCAATGCTTAATTGCTCTAGCTGCTCTTATTCCTGGTTTGAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAGTAAAGTATGTGAAAGAGCTTCAAGAACGTTTGAAGGTATTAGAGGAAAAGAACAAGAATAGTAATAGTACTAGTCCTGTTGAGTGTGTAGTGACAATGAATAATGGACCACAACTAAGTTACGATTCATCAAGCAATGATGAATCTGAAGCTGAAGCTGGTAGTGGTAATAATGAAGTTCTTGAACCCCATGTGGACGCAAGAATCTTGGACAAGGACGTACTCATAAGGATTCACTGCAAAAAGCAAAAGGGTCTTTTGCTCAAAGTATTGTTTGAGATTCAAAAGCTTAATCTCTTTGTTGTTAATAGCAGTGTCCTACCTTTTGGGGATTCTATCCTTGACATAACCATCGTTGCTCAGATGGGAACGGGGTACAAATTGACAAGAAATGGCCTTATAAAAAGCCTACGCGTGGCTGCATTAAGATACATGTCATAA 972 0.3735 MDKLNTSSNTSSTSWLSNMLFEEIDIEGCGDLFQQCEQNLFGDEEFLTHDIASVLQQDEILLEQSESYSMERPNKKLKPNTILQDVSPVSPSSTTSQILSFDCTLNTTKQNEVVPLSSQKHVQLPQNRGSKRSVAHNQDHIIAERKRREKLSQCLIALAALIPGLKKMDKASVLGDAVKYVKELQERLKVLEEKNKNSNSTSPVECVVTMNNGPQLSYDSSSNDESEAEAGSGNNEVLEPHVDARILDKDVLIRIHCKKQKGLLLKVLFEIQKLNLFVVNSSVLPFGDSILDITIVAQMGTGYKLTRNGLIKSLRVAALRYMS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5621 323 SMART finulus 141 190 IPR011598 GO:0046983
Tpr2g5621 323 MobiDBLite consensus disorder prediction 117 137 - -
Tpr2g5621 323 Gene3D - 125 200 IPR036638 GO:0046983
Tpr2g5621 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Tpr2g5621 323 Pfam Helix-loop-helix DNA-binding domain 139 185 IPR011598 GO:0046983
Tpr2g5621 323 Coils Coil 174 201 - -
Tpr2g5621 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 197 IPR036638 GO:0046983
Tpr2g5621 323 MobiDBLite consensus disorder prediction 117 132 - -
Tpr2g5621 323 PANTHER BHLH TRANSCRIPTION FACTOR 54 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5621 Tpr-Chr2 65032858 65038110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5621 76 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.217 4.58e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g5621 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5621 - - mtr:MTR_5g014560 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5621 2 65032858 65038110 Tpr2g5621 2 65032858 65038110 ECH