Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5613 ATGGCTACAGATATTGGCCTTCTTTCCAATATGACTCAGATCCAAAAATCTTCACAATCACAATCTCAACAACATCAACCAAACCCTAACTCCAACACAACCATAGCCTCACAATCACCATCAACTTGGATGTGGAACCCTAAACATCACCAACACCAACAAAATGATGAAGAAGAAGATGAAGATTCATGGGAGGTAAGAGCTTTTGCTGAAGATACAAGGAACATCATGAACACAACATGGCCACCAAGATCTTACTCTTGTACTTTTTGTAGAAGAGAGTTCAGGTCAGCACAGGCTCTCGGCGGTCACATGAATGTTCACCGCAGAGACCGTGCTCGCCTGCATCAAAATCAACCACCATTAAATTCCTCTCATCATCATCCTTCGTCTTCGCCGTTCATAAATATCCCTCCTCAAGAACTTGTTGCAAATGCTGGATTGTGCTTTCTTTACCATTTACCAAACCCTAATAGTAATAATGTTATTGGTTCTTCTTTCAATGGTTCTAATGGAGAATCTCCTTCAACTCTTCTTTCTATTTCATCATCAACATCTTATCCACCAAATAATTTGATGATGCAAATGCAAATGCAAACTTGTTCTCCTCCTCCATCTTTTAATTTTCAGGCTAATTCAGCTAGGAATATGATCAATCATAGCATTTCTTCTTTTTCTAGCAAAGTGGATCAACAAACTGCTATTTGCACCTCCATAGATGATAATAATGGTCATGGAATTGAAGAGCTTGATCTTGAGCTTCGATTGGGAAACAAGCCATGA 783 0.3921 MATDIGLLSNMTQIQKSSQSQSQQHQPNPNSNTTIASQSPSTWMWNPKHHQHQQNDEEEDEDSWEVRAFAEDTRNIMNTTWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSHHHPSSSPFINIPPQELVANAGLCFLYHLPNPNSNNVIGSSFNGSNGESPSTLLSISSSTSYPPNNLMMQMQMQTCSPPPSFNFQANSARNMINHSISSFSSKVDQQTAICTSIDDNNGHGIEELDLELRLGNKP* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5613 260 MobiDBLite consensus disorder prediction 1 40 - -
Tpr2g5613 260 Gene3D Classic Zinc Finger 73 133 - -
Tpr2g5613 260 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Tpr2g5613 260 PANTHER OS07G0101800 PROTEIN 44 257 - -
Tpr2g5613 260 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 44 257 - -
Tpr2g5613 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Tpr2g5613 260 SUPERFAMILY beta-beta-alpha zinc fingers 83 113 IPR036236 -
Tpr2g5613 260 Pfam C2H2-type zinc finger 86 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5613 Tpr-Chr2 64953112 64954297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5613 41 198 C2H2 Transcription Factor Family AT4G17810 40.230 8.70e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g5613 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5613 - - lja:Lj2g3v1984740.1 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5613 2 64953112 64954297 Tpr2g5613 2 64953112 64954297 ECH