Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5596 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTACTTCAAGGAGACAACAATTCTGCTTCTGAAATAAGAGCAAAGCTTGAATCTATGGACTATAATGTTTCTACCTTCTACAATGAGAATGAAGCCCTGTCAGCGATATCAAGTAGTTCCAAAGATTTCCATGTTGCCGTAGTGGAGGTGAGTATAAGCTGCCCTCATGGAGGTTTCAAATTTCTTGAGAATGCGAAGGACTTGCCAACCATTATGACTTCAAACAGTCGGTGCATAAACACCATGATGAAGTGCATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAGGACAAACTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGAGTCAAGTGCTATGTCTGAATCACTAAAACCTGTCAAAGAATCGGTAGAATCTATGTTGCAGCTCGAAACAGACAACAAACTACATGAGAGTACAATATTGATAGATTTAGAGAACGTGTCCAAGTCTAGTGATGATGAACACGAGCATTCCGCGGCAAGTGATAAATATCCGGCTCCTTCGACCCCTCAGTTAAAACAAGGTGCGAGATTAGTAGACGATGGCGATTGCCATGAGCAGACTAATTGCTCAATAGAAAAAGAAAGTGGGGAGCACGACGGTGGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATGTGAACGCAGAGAGTTCTCCTCAACCAACGAAACCTCTGATTAAGGAGGAAGATGATTTTGCCAATGGTTCGAAGGGTGAGAGTAGTGTTTTAACGAATCCACAAAGTAAAAAGTTACTCGGCGACACTGGTGTTAATGCATCTCCAAATGAAACAAGTGGTCCTAAGGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACACCTGAGCTGCACAAAAAATTCGTGAAGGCAGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATCATGCACACAGACGAAGATAAAAAATGGCCAAAACAAAGAGATACAATGCAAAGGAACTATTGTATGCAAAGACCAATCATGGCTTATCCACCATATCATTCTAATCACACCTATCCTCCAGCTCCTGTATATCCTATGTGGGGACAACCTGGAAGTCAAACAGCCGGTGTACCGATTTGGGCTCCGCCTGGTTATCCTCTATGGCAACAACCTACAGAAAGTTGGCATTGGAATCCTTATCCGGGGGTGCATGTAGATGCATGGGGTAACCCAATGTTGCCACTTCCTCAACCTCCTTGTGTACCCTACACTCAAAATATAACTGGGTTGCATAATGCTAAAGCAGTGGATTATAGATTTGGCATGCCTCAAAATTCCTTTGACCATTATCCGGCAGAGGAAATGGTGGACAAGGTTGTGAAGGAGGCAATAACCAAACCATGGCTACCATTACCAATAGGCCTCAAACCTCCTTCAATGGATAGTGTTTTGGATGAACTTACTAAACAAGGCATCCCTTTTAGCAAGAGCAAGGCCTCTAAACACTGA 1656 0.4263 MVCTANDLQGWKDFPKGLRVLLLQGDNNSASEIRAKLESMDYNVSTFYNENEALSAISSSSKDFHVAVVEVSISCPHGGFKFLENAKDLPTIMTSNSRCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAESSAMSESLKPVKESVESMLQLETDNKLHESTILIDLENVSKSSDDEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDGGECKFVETSCENVNAESSPQPTKPLIKEEDDFANGSKGESSVLTNPQSKKLLGDTGVNASPNETSGPKDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIMHTDEDKKWPKQRDTMQRNYCMQRPIMAYPPYHSNHTYPPAPVYPMWGQPGSQTAGVPIWAPPGYPLWQQPTESWHWNPYPGVHVDAWGNPMLPLPQPPCVPYTQNITGLHNAKAVDYRFGMPQNSFDHYPAEEMVDKVVKEAITKPWLPLPIGLKPPSMDSVLDELTKQGIPFSKSKASKH* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5596 551 MobiDBLite consensus disorder prediction 246 302 - -
Tpr2g5596 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 367 IPR017930 -
Tpr2g5596 551 Pfam Response regulator receiver domain 24 126 IPR001789 GO:0000160
Tpr2g5596 551 Gene3D - 307 369 - -
Tpr2g5596 551 Pfam Myb-like DNA-binding domain 314 363 IPR001005 -
Tpr2g5596 551 MobiDBLite consensus disorder prediction 269 301 - -
Tpr2g5596 551 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 550 IPR044825 GO:0003700|GO:0045893
Tpr2g5596 551 Gene3D - 18 148 - -
Tpr2g5596 551 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 550 - -
Tpr2g5596 551 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Tpr2g5596 551 SUPERFAMILY Homeodomain-like 310 368 IPR009057 -
Tpr2g5596 551 MobiDBLite consensus disorder prediction 177 205 - -
Tpr2g5596 551 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 311 366 IPR006447 GO:0003677
Tpr2g5596 551 MobiDBLite consensus disorder prediction 178 192 - -
Tpr2g5596 551 SUPERFAMILY CheY-like 16 135 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5596 Tpr-Chr2 64793371 64799213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5596 1 541 Response Regulator Gene Family AT4G18020 48.780 2.03e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr2g5596 Response_reg 8.6e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5596 - - gmx:100784905 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5596 2 64793371 64799213 Tpr4g3883 4 45007466 45014230 PCT