Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5561 ATGGAACTTCATTTTAAGCACCAAATTGGTTTAGTTTGTGTCATATTGCTCTTACCTATAATGTGTAACTCTCAAGACTCTTTTATTTGCTCTAGAGCAACCTATTATGGTAGCCCAGATTGTTATGGAAATCCAAAGGGAGCTTGTGGCTATGGCGATTACGGACAGACAGTAAACGATGGTAATGTCGCCGGCGTGTCCTGGCTGTGGAAGAATGGATCTGGTTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCACAATTGTGTGATGAGAATGGAGCATATGTGGTGGTGACCGATCATGGTGCGGGAGATAGGACAGATTTCATAATGAGTCCACGTGGCTATTCAAGATTGGGTATAAATGCTGATGCATCTGCAGAACTTTTCAAATATGGTGTGGTTGATATAGAATATAGAAGAGTCCCTTGCAAATACAATGGTTATAACATCTTGCTTAAGGTCCATGAACGCAGCAAAAACCCTCACTACTTGGCTATTATCATTCTCTATGTTGGTGGAACAAATGATATAACTGATGTTCAATTGTGGCAGGAAGATTGCCAAGAGTGGAGACCAATGCGTAGGGTGTTTGGGGTAGTGTTTGATGCAGAGAACCCTCCAAGAGGTCCTATAAAGTTGAGGTTACAAGTGAGTGGTAGTGGTGGCCTTTATTGGGTGGAATCCAAGAATGTTATCTCCAGTGACTGGGAAGCTGGGGCTGTTTATGACTCACAAATTCAGTTTGATTAA 756 0.422 MELHFKHQIGLVCVILLLPIMCNSQDSFICSRATYYGSPDCYGNPKGACGYGDYGQTVNDGNVAGVSWLWKNGSGCGACYQVRCKIPQLCDENGAYVVVTDHGAGDRTDFIMSPRGYSRLGINADASAELFKYGVVDIEYRRVPCKYNGYNILLKVHERSKNPHYLAIIILYVGGTNDITDVQLWQEDCQEWRPMRRVFGVVFDAENPPRGPIKLRLQVSGSGGLYWVESKNVISSDWEAGAVYDSQIQFD* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5561 251 Gene3D - 19 145 IPR036908 -
Tpr2g5561 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Tpr2g5561 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Tpr2g5561 251 Gene3D - 146 247 IPR036749 -
Tpr2g5561 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Tpr2g5561 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Tpr2g5561 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Tpr2g5561 251 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Tpr2g5561 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tpr2g5561 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Tpr2g5561 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Tpr2g5561 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Tpr2g5561 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Tpr2g5561 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Tpr2g5561 251 PANTHER EXPANSIN-B3 4 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5561 Tpr-Chr2 64335614 64337931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5561 11 248 Expansin Gene Family AT4G17030 60.669 1.52e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5561 - - gmx:100802855 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5561 2 64335614 64337931 Tpr5g2569 5 47701156 47703861 PCT