Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5560 ATGCATGATGATGACTCAACGTCCTTGTCATCCAATATCGATATAGGTGGTTCTGGTGTTCGTATGGAAGAGGCTGTAACTAAAAGGTATCCTCCTCGTAGAGAAGTTGCAGCAGCGATCAGAGATTTTCCACGTATATTTGGACGCAATGCTCCCCTTCTTACTACGGACGAGTGTTTAAGGGAGCCCTCTTCTGCGATCAGAGATTTTCCACATTTATGTGGACCCAATGCTCCCCTTCTTACTACGGACGAGTGTTTAAGGGAGCTCTCTTCTTTGAATAAAAAGAGAATGGGTCAAACTGACGTAAAAGAAGTGGATAATAACGAGAGAAAGCTTGCTAACATCGTTCAAGCTGACTCTGAAGGGAATGCTACACAAAGAGTTAAGAAGATGGATGTAGTTGAACCATCTTCTGAGATGAGATTGGCACTGGATAACACAAGAGAAAAGAACACTCAACTTTCTGAAAAATATAATCACCATCAGGTTAACATAAATCCAAAGGTAGTGGTTAAAGAGGAAAACACAAACACTGTACAGCTTGAGGGAACATCAGGCAGAAAAATAGTGCTAGGTTTTATTTCTAAATCAGAATGTCCTTGGAGATCTGATCTCAGTCCCCCCAAATTTAAACCAGCATTAATAGGTGGCCCAGATGAAAGGAAGGGAAAGAAAGTTGATTATTATGCCCAACTAGACAGGTCTAAAACTGCTGTCAAGACAAAACATGTACCTAATCATTCTGGGCACGTGCAGTTGAAAAAGAATAATGGAAATGCTACTTCTGATTGCATGGGTGAATTAGTAAGACGGGAGAATAATTCTCTAGACCCTAAACATAAAAACTTTAAACGCGTCCCAAAATCATATGGTGTTAATGTTCCTCCTCTTGGTCGTAGTAATTTCAGTGGTCATCAGAATGACTCAATGGCCCGAAATAAAGTGAAGAATGCATTGCGCCTGTTCCAAGTTGTTTCTAGAAAGCTTTTGCAGGAAGCGGAAGCAAAAGCAAAGTCAAACGAGAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCGAAAATACTTAAGGAGAAAGGGTACTATGTTAACGAAGGGGATAAGATCTTGGGATCTGTCCCTGGGGTTGAAGTCGGTGATGAATTTCAATATAGAATAGAGCTTAATGTAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTGAAGCAGAAAAATAAAGTCCTTGCAACTAGTATTGTTGCGTCAGGGGGCTATTCTGATGAATTAGATAATACAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGTGCAGTGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAACCTTGCTCTGAAGAACAGCAGCGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCGGAATCAATGGATGGGAAAAGCAAGATATATGTTTATGATGGACTTTATATAGTTGAGTCATGTTGGCAGGAAATGGGGTCACATGGGAAGCTGGTTTATAAGTTTCGCTTGCGAAGAATCCCAGGTCAACCAGCCTTGAAGGAACTAAAAAAATCTAAAAGTAAATTAATTTGA 1599 0.4053 MHDDDSTSLSSNIDIGGSGVRMEEAVTKRYPPRREVAAAIRDFPRIFGRNAPLLTTDECLREPSSAIRDFPHLCGPNAPLLTTDECLRELSSLNKKRMGQTDVKEVDNNERKLANIVQADSEGNATQRVKKMDVVEPSSEMRLALDNTREKNTQLSEKYNHHQVNINPKVVVKEENTNTVQLEGTSGRKIVLGFISKSECPWRSDLSPPKFKPALIGGPDERKGKKVDYYAQLDRSKTAVKTKHVPNHSGHVQLKKNNGNATSDCMGELVRRENNSLDPKHKNFKRVPKSYGVNVPPLGRSNFSGHQNDSMARNKVKNALRLFQVVSRKLLQEAEAKAKSNEKERRRFDLQAAKILKEKGYYVNEGDKILGSVPGVEVGDEFQYRIELNVIGLHRQIQGGIDYVKQKNKVLATSIVASGGYSDELDNTDVLIYTGQGGNVMCSDKDPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKSKIYVYDGLYIVESCWQEMGSHGKLVYKFRLRRIPGQPALKELKKSKSKLI* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5560 532 Coils Coil 331 351 - -
Tpr2g5560 532 SMART G9a_1 366 518 IPR003105 -
Tpr2g5560 532 ProSiteProfiles YDG domain profile. 371 514 IPR003105 -
Tpr2g5560 532 Gene3D - 352 531 IPR036987 -
Tpr2g5560 532 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 174 530 - -
Tpr2g5560 532 Pfam SAD/SRA domain 370 518 IPR003105 -
Tpr2g5560 532 SUPERFAMILY PUA domain-like 353 523 IPR015947 -
Tpr2g5560 532 Coils Coil 145 165 - -
Tpr2g5560 532 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 174 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5560 Tpr-Chr2 64332983 64335489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5560 316 531 Su(var)3-9 homologs AT1G73100 43.439 2.39e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5560 K11420 - gmx:100803378 479.944