Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5559 ATGAGTTCGGAGCCACCGAGAGGAACGGTAGAATCAATGTCACTGTGTAATGGACATTCTGAACAAGAATTAGGGATTCCGTTGATGGAGAATGGAGGCTCTAGTATTCTTACTCGGCCCAAGATTAAGCGCCGTGCAGTTTCTGCAGTTCGTGATTTTCCTGAAGAATGTGGACCATTTGGTTCTGCTGATGGTACATCTCTTGAAGATAAGAGTGAAGACTGTTTAGGCGGTGAAGCTGTTTGTCCCAACCTTGAAGATGATTCTCAACATTCTGAGGTTGATAAAAAGTTGTTTGATACAGAGGCTCTTGAACAAACAAGTGACTGTAGTTTGAAGAAGGAAGATCCTGTTGTCTTATCTGATCAAGTGGATGGGGATACTTTGGCTAACGACGAGCCTGGAAAAGTGGCATTGGTGGACATGGAAACTTCGGATATGGAATTTACAACTGAAGTGAAAACGGAAGATCATATGGTCTCATCTAATCAAGGGGATGGGGATACTTTGGCTAATAATGAACCTGCAAAAGTGTCATCGGTGGACATGGAAACTGGAGATATGGAATTTGCAACTGAAGTGAAAAAGGAAGATCAGGTCTCATCTCATCAAGTCAATCAGCCTACATTGGATAATGATGAACAAGCAAATGTGGCATTGGCAGACATGGAAACTTTGGATGCAGAATTTGCAACTGAAAGCTGTAGTCCGAAGAAGGAAAATCCAATGGATGAATCTACTCTGGCTAATGGCGAACCTGCAAAACAGGCATTGGTAGGCACAGAAACTTTGGATACTGAATTTGCAACAGAAGACCTCATAAAACAAGATTTCTCTAATATAATGTCTCCAATTGGTGAGGTAGTTATGGATGATGCTTGTATGGAGGAGGCTGTAACTAAAAGGTATCCTCCTCGTAGAAAAGTTGCAGCAGCGATCAGAGATTTTCCACATTTATGTGGACGCAATGCTCCCCTTCTTACTACGGACGAGCGTTTAAGGGAGCTATCTTCTTTGAATAAAAAGAGAGTGGGTCAAACTGACATAAAAGAAGTAGATAATAACAAGAGAAAGCTTGCTAACATCATTCAAGCTGACTCTGAAGGGAATGCTACACAGAGAGTTAAGAAGATGGATGTAGTTGATTCATCTTCTGAGATGAGATTGGCACTGGTTAAAGAGGAAAACACAAACACTGTACAGGTCGAAGGAACATCAGGCAGGAAAACAGTGCAAGGTTTGATGGCTAAATCAGAATGTCCTTGGAGATCTGATATCAGTTCCCCCAAATTTAAACCAGCATCAATAGGTGGCACTGATGAAAGGAAGGGAAAGAAAGTTGATTATTATGCCCAGCTAGACAGGTCTAAAACTGCTGTCAAGACAAAACATTTACCGAATCATTCTGGGCACGTGCAGTTGAAAAAGAAAAATGGAAATGCTGCTTCTGATGACATGGGTGAATTAGTAAGACGGGAGAATAATTCTCTAGACCCTAAACATAAAAACTTTAAAATTGTCCCAAAATCACATGGTGTAAATGTTCCTCCTCTTGGTCGTAGTAATTTCAGTGGTCATGAGAATGACTCAATGGCCCGAAATAATGTGAGGAAAGCATTGCGCCTGTTCCAAGCTGTTTATAGAAAGCTTTTGCAGGAAGCGGAAGCAAAAGCAAAGTCAAACGATAAAGAAAGAAGGAGGTTTGATTTACAAGCTGCGAAAATACTTAAGGAGAAAGGGAGCTATGTTAATGAAGGGGATAAGATCTTGGGATCTGTCCCCGGGGTTGAAGTTGGTGATGAATTTCAATATAGAATCGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTTTGTGAGGCAGAAAAATAAAGTCCTTGCCACTAGTATTGTTGCGTCAGGGGGCTATTCTGATGACTTAGATAATACAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGACCCAGAAGATCAGAAGCTTGAAAGGGGCAACCTTGCTCTGAAGACCAGCAGTGAGGAAAAGAATCCTGTTAGGGTGATACGGGGTTCGGAATCAATGGATGGAAAAAGCAAGATATATGTTTATGATGGACTTTATCTAGTTGAGTCATGTTGGCAGGAAATGGGGTCACATGGGAAGCTGGTTTATAAGTTTCGCTTGCGAAGAATCCCAGGTCAAACCGAGCTTGCCTTGAAGGAACTGAAGAAATCTAAAAAGTTCAAAATAAGAGAAGGTCAATGCGTCAAAGATATTTCCTACGGTAAAGAGAGAATTCCCGTATGTGCTGTGAACACCATAGACGACGAGAAGCCCCCTCCATTTAAATACATAACTAAGATGATATATCCTGATCGTTGCAATCTTGTCCCTCCAGAAGGCTGTGGTTGTACTAATGGATGCTCTGACCATGCAAAATGTTCCTGTGTACTAAAAAATGGGGGGGAAATTCCTTATAATCATAATGGGGCTATTGTAGAAGCAAAGTCTGTAGTCTATGAGTGTGGGCCTAAATGCAAGTGCCCTCCAACCTGCCATAACAGGGTGAGCCAACTTGGCATAAATATTCAACTTGAAATTTTTAAAACCAATTCAATGGGGTGGGGTGTAAGATCCCTAAATTCCATTCCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGGTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACAAAACCAACAATACTCTTTGGGATGGACTTTCGACACTTATACCAGATTCACACTCAAGTTCATGTGAAGTAGTGAATGATGTTGGCTTCACTATCGATGCCGCTCAGTTTGGTAATGTGGGGAGATTCATCAACCACAGTTGCTCCCCCAATCTCTATGCTCAGAATGTCCTTTATGATCATCATGACATCAGGATTCCTCACGTCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGAGTTACGATTACAATTATATGATAGATCAAGTCCGTGATTCTGATGGCAATATCAAAAAGAAGTACTGCTATTGTGGTTCTGTGGAGTGTACTGGTTTCCTCCTCCGGAGGTAA 3129 0.412 MSSEPPRGTVESMSLCNGHSEQELGIPLMENGGSSILTRPKIKRRAVSAVRDFPEECGPFGSADGTSLEDKSEDCLGGEAVCPNLEDDSQHSEVDKKLFDTEALEQTSDCSLKKEDPVVLSDQVDGDTLANDEPGKVALVDMETSDMEFTTEVKTEDHMVSSNQGDGDTLANNEPAKVSSVDMETGDMEFATEVKKEDQVSSHQVNQPTLDNDEQANVALADMETLDAEFATESCSPKKENPMDESTLANGEPAKQALVGTETLDTEFATEDLIKQDFSNIMSPIGEVVMDDACMEEAVTKRYPPRRKVAAAIRDFPHLCGRNAPLLTTDERLRELSSLNKKRVGQTDIKEVDNNKRKLANIIQADSEGNATQRVKKMDVVDSSSEMRLALVKEENTNTVQVEGTSGRKTVQGLMAKSECPWRSDISSPKFKPASIGGTDERKGKKVDYYAQLDRSKTAVKTKHLPNHSGHVQLKKKNGNAASDDMGELVRRENNSLDPKHKNFKIVPKSHGVNVPPLGRSNFSGHENDSMARNNVRKALRLFQAVYRKLLQEAEAKAKSNDKERRRFDLQAAKILKEKGSYVNEGDKILGSVPGVEVGDEFQYRIELNIIGLHRQIQGGIDFVRQKNKVLATSIVASGGYSDDLDNTDVLIYTGQGGNVMSSDKDPEDQKLERGNLALKTSSEEKNPVRVIRGSESMDGKSKIYVYDGLYLVESCWQEMGSHGKLVYKFRLRRIPGQTELALKELKKSKKFKIREGQCVKDISYGKERIPVCAVNTIDDEKPPPFKYITKMIYPDRCNLVPPEGCGCTNGCSDHAKCSCVLKNGGEIPYNHNGAIVEAKSVVYECGPKCKCPPTCHNRVSQLGINIQLEIFKTNSMGWGVRSLNSIPSGSFICEYIGEVLEDKEAEQRTGNDEYLFDIGNNKTNNTLWDGLSTLIPDSHSSSCEVVNDVGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDIRIPHVMLFAAENIPPLQELSYDYNYMIDQVRDSDGNIKKKYCYCGSVECTGFLLRR* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5559 1042 SUPERFAMILY PUA domain-like 575 746 IPR015947 -
Tpr2g5559 1042 SMART preset_2 760 851 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr2g5559 1042 SMART set_7 867 1016 IPR001214 GO:0005515
Tpr2g5559 1042 ProSiteProfiles SET domain profile. 867 1010 IPR001214 GO:0005515
Tpr2g5559 1042 Pfam Pre-SET motif 763 859 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr2g5559 1042 ProSiteProfiles Pre-SET domain profile. 804 864 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr2g5559 1042 Gene3D - 572 754 IPR036987 -
Tpr2g5559 1042 Pfam SET domain 878 1010 IPR001214 GO:0005515
Tpr2g5559 1042 ProSiteProfiles Post-SET domain profile. 1024 1040 IPR003616 -
Tpr2g5559 1042 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 503 1037 - -
Tpr2g5559 1042 Pfam SAD/SRA domain 590 738 IPR003105 -
Tpr2g5559 1042 ProSiteProfiles YDG domain profile. 591 734 IPR003105 -
Tpr2g5559 1042 CDD SET_AtSUVH-like 784 1011 - -
Tpr2g5559 1042 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 503 1037 - -
Tpr2g5559 1042 Gene3D SET domain 755 1040 IPR046341 -
Tpr2g5559 1042 SUPERFAMILY SET domain 750 1011 IPR046341 -
Tpr2g5559 1042 SMART G9a_1 586 738 IPR003105 -
Tpr2g5559 1042 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 183 1042 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5559 Tpr-Chr2 64325486 64330904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5559 533 1037 Su(var)3-9 homologs AT5G04940 40.230 2.12e-113 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr2g5559 SAD_SRA 6.6e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5559 K11420 - gmx:100803378 1097.42