Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5558 ATGGGTAAACATGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAATACTATGCAATGCATGTGGTTCTCGGTGGAGGACAAAGGGAACACTTGCGAATTATACGCCCTTACATGCTCGGGCTGAAACTGATGATTTTGATGATCAAAAGGCTTCCAGGGTAAAGAGCGTATCGTTAAATAAGAACAGAGAAGTGAAATCGCTCAAACGGAAGCAGAACCGTGATAATGTAGCATCTGGTGGGTTTGCATATGATTACAACCAGGGATTCCAAAAGGCTGTTGACGAAGATATAAGTAATCGATCAAGTTCAGGATCAGCCTTGTCTAACTCAGAAAGCTGTGCCCAATTTGGCGGCACAGATGCTAGTGATCTGACAGGACCTGCTCAGTCAGTGGTGTGGGATACCACGGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTTCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACGATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTACGAAAGTGAAGCACCAATGGTTTCTGTTGAGATAGGACACGGAAGTGTTCTCATTAGGCATCCTAGCTATGTAGCTCGTGATGAAGAGTCTGAGGCTAGCTCTCTTTCATTCGATAATAGACAATATCTGATGAGTGAAGCATATTCTTATTCTGGTGCTGTTCTTACGCATAATGGTTCCAGTCGCACGAACTTCTCATCTCAGGGAGCTGGAAAGGCCAGGAACTCGGCAGTCCATGGAATGAAGCAGGAGCAAGTTAAAAGTGACAAGTCTCAGATTGAAAGAGAACAAATCCTTGAAAGTCATGATTCACCACTTTGCTTAATAGATTTAAATGATGTGGTAAACTATGAAGAGTTTTCGAGGAACTTGTCAAATGAAGAGCAACAGCAATTGTTTAAGTTTCTTCCTGCGGTTGATACTGCTAAACTTCCTGATAGCCTTAACGTCATGTTCGATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGTGGAAGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGACTGCAAAACTTTGAAAAGATATGCACTTTCTAATTTTACAAAGTCGAAATGGGTGGAACACTATCATTTACTCAAGAGATGTAAAAATAGAGCTGAAAAATCCGATACTCCGGGATCTGCAGCATCAGCCAATATTGCAAACACAAAGAGAAAGCATGATAGCAGAATTCAGAACTTTTCAGAGGTGAAGACAATAATGAGGAGCCCCAAAAGAATTATCACAAAGACTAGTTATGAGGGAAAACTTGTCGATGATGGCAGTTTCTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCTAGCTCACACTTGCTAGATTCTTTTAACTTTGTCGAGGAGAGTTCTGATCAGGATTTGCTGCTAGACGTGCCGTCGAATAATTCTTTTCCACAGGCAGAACTCTTGCACCCAAATTTAAGCTATGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACTCGCATCTTATGAACCATTAA 1614 0.4195 MGKHGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQKASRVKSVSLNKNREVKSLKRKQNRDNVASGGFAYDYNQGFQKAVDEDISNRSSSGSALSNSESCAQFGGTDASDLTGPAQSVVWDTTVPSKKRTCVGRSKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFDNRQYLMSEAYSYSGAVLTHNGSSRTNFSSQGAGKARNSAVHGMKQEQVKSDKSQIEREQILESHDSPLCLIDLNDVVNYEEFSRNLSNEEQQQLFKFLPAVDTAKLPDSLNVMFDSSQFKENLTYFQQLLVEGVFDISLSGAKPEDCKTLKRYALSNFTKSKWVEHYHLLKRCKNRAEKSDTPGSAASANIANTKRKHDSRIQNFSEVKTIMRSPKRIITKTSYEGKLVDDGSFYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLDVPSNNSFPQAELLHPNLSYGAQASTSSSSAYSHLMNH* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5558 537 CDD ZnF_GATA 6 66 IPR000679 GO:0006355|GO:0043565
Tpr2g5558 537 Gene3D - 275 392 IPR038108 -
Tpr2g5558 537 Gene3D - 4 88 IPR013088 GO:0006355|GO:0008270
Tpr2g5558 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Tpr2g5558 537 MobiDBLite consensus disorder prediction 259 283 - -
Tpr2g5558 537 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Tpr2g5558 537 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
Tpr2g5558 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Tpr2g5558 537 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Tpr2g5558 537 Pfam Asx homology domain 280 367 IPR028020 -
Tpr2g5558 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Tpr2g5558 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Tpr2g5558 537 PANTHER GATA TRANSCRIPTION FACTOR 26 1 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5558 Tpr-Chr2 64319520 64324310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5558 1 514 C2C2-Gata Transcription Factor Family AT4G17570 53.510 5.45e-162 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr2g5558 ASXH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5558 - - gmx:100798504 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5558 2 64319520 64324310 Tpr5g2586 5 47864691 47870663 PCT