Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5543 ATGTACGGAGAAAGTACATATGAATCTGATGTGGCTCTTTTAGAGTCGATTCGGCTTCACTTACTTGGAGATTCCGATGTTTTTACATTCGGAGCTCCCAATAATGCTCCAATATTCTGTCGGAGCTCAAGTTTCAGCAACCTTAACCCATGTCTGAGTGAAAATTGGGGAGAACTACCACTCAAAGAAGATGATTCAGATGACATGGTGCTTTACGGTGTACTTCGTGACGCCGTTAATGTTGGGTGGATCCCATCTCTCGATGCAGGCTCACCGGAGAGTTTTTCTTCGTCTGGTTTAATGCCGTCGAGGATTGTTAAATCGGAGCCGGAAGTTCAGAGTTCAACTGAAATGATTGTTTCATCTCCGGTGGATGTGCCGACGAAGGGGAAGCATTATAGGGGAGTGAGACGGCGGCCGTGGGGAAAATTTGCGGCGGAGATACGTGATCCGGCTAAAAATGGGGCGCGGGTTTGGCTTGGAACATTTGAAACGGCTGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTATAGAATGCGTGGGTCAAAAGCTATGTTGAATTTTCCGCTTCGGGTTAATTCCGGTGAGCCTGACCCGGTTAGAGTGCCGTCGAAGCGGTTTTCTTCTTCGTCGGAGTATGGATTGTTGGTGAAACGGAGGAAGAAGGTGGTGGGGGCAACGGTGGATTGA 693 0.4834 MYGESTYESDVALLESIRLHLLGDSDVFTFGAPNNAPIFCRSSSFSNLNPCLSENWGELPLKEDDSDDMVLYGVLRDAVNVGWIPSLDAGSPESFSSSGLMPSRIVKSEPEVQSSTEMIVSSPVDVPTKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKAMLNFPLRVNSGEPDPVRVPSKRFSSSSEYGLLVKRRKKVVGATVD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5543 230 Pfam AP2 domain 132 182 IPR001471 GO:0003700|GO:0006355
Tpr2g5543 230 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700|GO:0006355
Tpr2g5543 230 SUPERFAMILY DNA-binding domain 132 192 IPR016177 GO:0003677
Tpr2g5543 230 Gene3D AP2/ERF domain 131 193 IPR036955 GO:0003700|GO:0006355
Tpr2g5543 230 PANTHER DNA-BINDING DOMAIN 23 227 IPR044808 GO:0003700|GO:0009873
Tpr2g5543 230 SMART rav1_2 132 196 IPR001471 GO:0003700|GO:0006355
Tpr2g5543 230 CDD AP2 131 190 IPR001471 GO:0003700|GO:0006355
Tpr2g5543 230 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Tpr2g5543 230 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Tpr2g5543 230 PANTHER BNAANNG21280D PROTEIN 23 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5543 Tpr-Chr2 64209277 64210899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5543 8 230 AP2-EREBP Transcription Factor Family AT4G17500 53.200 6.71e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g5543 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5543 K09286 - gmx:100819649 318.161