Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5539 ATGGCTGCAACTATGATAGGAGGAGCTTTTCTCTCTGCAACTGTTCAAACCTTAGTTGAGAAACTTGCTTCAAAAGAATTTCTTGATTACATCACAAACACCAAGCTCAATGTCTCACTCTTGAGACAGTTAAAAACAACACTGCTCACTCTTCAGGCTGTGCTGGATGATGCTGAGGAGAAGCAGATCAACAATCCTTCTGTCAAACAATGGCTTGATGACTTGAAAGATGTTGTCTTTGATGCCGAGGATTTGTTCAACCAAATCAGCTACGATTCTCTACGTTGCAAGGTGGAGAATACACAAGCTGCAAACAAGACTAATCAGGTGTGGAATTTCCTTTCATCTCCTTTTAAAAACATCTTTGGAAAGATCAATTCCCAAATGAAGATCATGTGTGAAACCCTGCAGCTTTTTGCACAGCATAAAGATATCCTTGGTTTGCAAATTAAAAGTGCACGAGTTTCTCATAGAACACCTTCAAGTTCTATGGTCAATGAACCTGTCATGGTTGGTAGGAAAGATGACAAAGAGATAGTAATGAACATGTTACTATCAGATAATGGCACTAGCAATAACAATATAGGCGTTGTTGCAATTTTAGGCATGGGTGGTGTCGGAAAAACAACACTTGCACAGCTTGCTTACAATGATGATAAAGTTCAAGAGCACTTTGATCTCAAAGCATGGGCTTGTGTATCTGAGGATTTTAATATTTTGAAAGTAACAAAAACTCTCCTTGAATCTGTCACTTCAAAGGCATGGGAAAGTAATAATCTTGATGTTCTTCGAGTTGAACTAAAGAAATATTTGAGAGACAAAAGATTTTTGATTGTGTTGGATAACCTATGGAATGATAATTATAATGATTGGGATGAACATGTAACTCCCTTGATTAAAGGAAATAGTGGAAGTAGAGTGATTGTCACAACACGCCAAGAAAAAGTTGCAATTGTTGCACACACATTTCCTATTCATAAATTAGAAGTTCTATCAGATGAAGACAGTTGGTCATTACTCTCAAAGCATGCATTTGGAAGTGAAGAATTTTGTGGAAGTAAATGCTTAAACCTAGAAGTTATTGGCAGAAAAATTGCGAAAAAATGTGGTGGATTGCCCATAGCTGCTAAAACACTTGGAGGATTATTGCGTTCAAAAGTAGATACTAAAGAGTGGATTGAAGTTCTAAATAGTGAAATATGGAACTTACCAAATGATAATATTTTGCCTGCATTGTTTCTGAGTTATCAATATCTTTCCTCTCAGTTGAAATGGTGTTTTTCCTATTGTTCCATTTTTCCGAAGTACTATCCACTTGATAGGAAGCAATTGGTTTTCTTGTGGATGGCAGAAGGATTCCTTGATCATTCTCAAGACCGAAAATCTATGGAGGAAGTAGGCGACGAGTGTTTTGCTGAATTTTTATCTAGATCATTAATTCAACAATTGCATGATGATTCTAGAGGACAAAAGTTTGTCATGCATGACCTGGTTAATGATTTAGCTACAGTTGTATCTGGAAAAAGTTGTTATAGGCTTGACTTTAGTGGCGACAGCTCTAAAAATGTGCGCCATTTGTCATATAATCAAGAAGAGTTTGACATAGGCAATAAGTTTATGATTTTAAACAAATTCAAATGCTTAAGAAGCTTCCTACCTATTGGCTCTGGATGGGAAAGTTACTTATCAATAAAGGTGGTCAATGATTTTCTACCCTCACTTGGAAGGCTGCGGGTCTTATCATTATCAAAATATGATAACATCACCGTGGTTCCAGATTCAATTGGCAATTTGGTGCATTTGCGCTATCTAGACCTCTCTCACACTAAAATCAAAAGCTTGCCAGACACAATGTGCAATCTCTATAACTTGCAAACCTTGCTTCTATCAGGGTGCTCAAATCTCACAGAACTTCCAGAAAATATTGGAAAGTTAATTAATTTACGTCACCTTGATGTCGATATGACGAGCATAACAGAGATGCCAAAGCAAATTGTTGAACTAGAAAACCTTCAAACTTTAACTGTTTTTGTAGTAGGCAAGAAAAATATTGGTTTAAGTGTCAGAGAACTCGGGAGGTTTCCTAAACTACGGGGGAAATTATTCATCAAGAACTTGGAAAATGTCATTGATGTTGTGGAAGCATATGATACCAACTTGAAGAGCAAAGAACATATTGAGGAATTAACGTTACAGTGGGGCAAAGAAACTGATGACTCACTTAAAGATAAAGATGTGCTTGATATGTTACAACCATCACCAAACCTGAAGAAGTTGAGCATTGACTTGTATGGTGGGACAAGTTTTCCTAGTTGGTTGGGAGATTCTTCATTTTTTAACATGGTGTCCCTTCGCATCGATAATTGTGCATATTGCGTGACACTTCCACCACTAGGGCAGCTAACTTTTCTCAAGGACCTAAGTATAAGATGTATGTCAACATTGGAGACAATTGGCCCGGAGTTTTATGGAATGGTAGGAGGAGGTTCCAACTCTTCCATTCAACCCTTTTCATCCCTTGAGGAGCTGGTAATTAAGGAAATGTCAAATTGGAAGGAATGGCTTCCCCTTCAAGACGACATATTTCCTTTTCCTCGTCTTAAAACTCTAAAGTTATCTAAGTGTCCTGAACTGAGAGGGTGTTTTCCTAGTCATCTTCCTTCCATAGAAGAAATCAAAATAAAAGATTGTGATCTTCTGGCCACACCATCAACTGAGCCTTGGCTCTCCTCAATTAAAAAACTTTTTATTGCAAGAGATTTACATTCTGAAAGCAATACTAAACACATACAATGCTCATTGCTTGAGAGTGATTCTCCATATCTTCTGCAAGATATGACGATAAGGAGTTGTCAAATCCTTAAATCTGGTCCTGAGATGATTGTAAACAGCACTTGTCTCAGAGAATTGAATCTTTGTGGCCTTTGGTCTCTCAATTCATTTCCAACAAATGGTCTATCCACTTCTTTGCAAACACTTTGTATTCGCGATTGTAACAACTTAGCATTCCTCCCTCTTAAAACGTGGAGCAATTACACATCGCTTGTGAAACTTGATTTACATAATAGTTGTGACACACTTACCTCCTTCCCATTGAATGGTTTTCCTATGCTCCAAGATCTTTCCATTTGTGAATGTAGGAGTTTTGAATCTATTTTTATTCCAGAAACTTCTTCCCTTAGCTTGTCAACCCTCCAATATCTTTATGTCGATGGTTGCAAGGCACTTGCATTATTACCTCAACGGATGCACACCCTCACCGCTCTTGTATTTATGTACCTCCGTAATCTTCCAAGTTTGAAGTTATCATTTTGCAATGGAGCTTTGTTACCTCCCAATTTAGATTCATTTTATGTTGATTTTGTGAGAATAACAAAGCCTGTAACAGAGTGGGGTTTCCAAGGCCTTACTACTCTTTCATCAATGCATATCGGAGGTGATGATATTGTTAACATGTTGCTCAAGGAACAAGTGCTGCCTATTTCCCTGGTTTATCTAACTATAAGGAATCTCTCTGAAATTAAATCCTTTGAAGAAAATAAACTTCGACACCTCTCCTCTCTAAAAAGTCTCGCCTTTTATGATTGTTCAAGACTCGAGTCATTGCCAGAAAACATGATGCTGACCTCGCTGAAATGTCTTCTATTTGAAAATTGTGAAAATCTTGAGTCGTTACCAGAAAACAACCTCCCTGACTTTCTTGAGCTACTGTGCATTAATGAATGCCCATTGTTAGAAGAAAGGTATAAAAAGAAGGAACATTGGTCCAAAATTGCACACATTCCTGTCATACAAATAAATGACCAAGTCACAATATGA 3819 0.375 MAATMIGGAFLSATVQTLVEKLASKEFLDYITNTKLNVSLLRQLKTTLLTLQAVLDDAEEKQINNPSVKQWLDDLKDVVFDAEDLFNQISYDSLRCKVENTQAANKTNQVWNFLSSPFKNIFGKINSQMKIMCETLQLFAQHKDILGLQIKSARVSHRTPSSSMVNEPVMVGRKDDKEIVMNMLLSDNGTSNNNIGVVAILGMGGVGKTTLAQLAYNDDKVQEHFDLKAWACVSEDFNILKVTKTLLESVTSKAWESNNLDVLRVELKKYLRDKRFLIVLDNLWNDNYNDWDEHVTPLIKGNSGSRVIVTTRQEKVAIVAHTFPIHKLEVLSDEDSWSLLSKHAFGSEEFCGSKCLNLEVIGRKIAKKCGGLPIAAKTLGGLLRSKVDTKEWIEVLNSEIWNLPNDNILPALFLSYQYLSSQLKWCFSYCSIFPKYYPLDRKQLVFLWMAEGFLDHSQDRKSMEEVGDECFAEFLSRSLIQQLHDDSRGQKFVMHDLVNDLATVVSGKSCYRLDFSGDSSKNVRHLSYNQEEFDIGNKFMILNKFKCLRSFLPIGSGWESYLSIKVVNDFLPSLGRLRVLSLSKYDNITVVPDSIGNLVHLRYLDLSHTKIKSLPDTMCNLYNLQTLLLSGCSNLTELPENIGKLINLRHLDVDMTSITEMPKQIVELENLQTLTVFVVGKKNIGLSVRELGRFPKLRGKLFIKNLENVIDVVEAYDTNLKSKEHIEELTLQWGKETDDSLKDKDVLDMLQPSPNLKKLSIDLYGGTSFPSWLGDSSFFNMVSLRIDNCAYCVTLPPLGQLTFLKDLSIRCMSTLETIGPEFYGMVGGGSNSSIQPFSSLEELVIKEMSNWKEWLPLQDDIFPFPRLKTLKLSKCPELRGCFPSHLPSIEEIKIKDCDLLATPSTEPWLSSIKKLFIARDLHSESNTKHIQCSLLESDSPYLLQDMTIRSCQILKSGPEMIVNSTCLRELNLCGLWSLNSFPTNGLSTSLQTLCIRDCNNLAFLPLKTWSNYTSLVKLDLHNSCDTLTSFPLNGFPMLQDLSICECRSFESIFIPETSSLSLSTLQYLYVDGCKALALLPQRMHTLTALVFMYLRNLPSLKLSFCNGALLPPNLDSFYVDFVRITKPVTEWGFQGLTTLSSMHIGGDDIVNMLLKEQVLPISLVYLTIRNLSEIKSFEENKLRHLSSLKSLAFYDCSRLESLPENMMLTSLKCLLFENCENLESLPENNLPDFLELLCINECPLLEERYKKKEHWSKIAHIPVIQINDQVTI* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5539 1272 Pfam Rx N-terminal domain 10 102 IPR041118 -
Tpr2g5539 1272 SUPERFAMILY L domain-like 493 925 - -
Tpr2g5539 1272 PRINTS Disease resistance protein signature 197 212 - -
Tpr2g5539 1272 PRINTS Disease resistance protein signature 270 284 - -
Tpr2g5539 1272 PRINTS Disease resistance protein signature 369 383 - -
Tpr2g5539 1272 PRINTS Disease resistance protein signature 619 635 - -
Tpr2g5539 1272 Coils Coil 41 61 - -
Tpr2g5539 1272 Gene3D Ribonuclease Inhibitor 903 1093 IPR032675 -
Tpr2g5539 1272 Pfam Leucine rich repeat 576 632 IPR001611 GO:0005515
Tpr2g5539 1272 Gene3D Ribonuclease Inhibitor 559 711 IPR032675 -
Tpr2g5539 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 430 IPR027417 -
Tpr2g5539 1272 Gene3D - 14 132 - -
Tpr2g5539 1272 Gene3D - 151 322 IPR027417 -
Tpr2g5539 1272 Gene3D - 330 420 IPR042197 -
Tpr2g5539 1272 CDD RX-CC_like 13 84 IPR038005 -
Tpr2g5539 1272 Gene3D - 421 503 IPR036388 -
Tpr2g5539 1272 SUPERFAMILY L domain-like 941 1249 - -
Tpr2g5539 1272 Gene3D Ribonuclease Inhibitor 1094 1259 IPR032675 -
Tpr2g5539 1272 Gene3D Ribonuclease Inhibitor 713 897 IPR032675 -
Tpr2g5539 1272 SMART LRR_typ_2 598 621 IPR003591 -
Tpr2g5539 1272 SMART LRR_typ_2 645 668 IPR003591 -
Tpr2g5539 1272 PANTHER DISEASE RESISTANCE PROTEIN RP 23 1001 IPR044974 GO:0006952
Tpr2g5539 1272 ProSiteProfiles Leucine-rich repeat profile. 600 621 IPR001611 GO:0005515
Tpr2g5539 1272 Pfam NB-ARC domain 192 397 IPR002182 GO:0043531
Tpr2g5539 1272 PANTHER OS05G0414200 PROTEIN 23 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5539 Tpr-Chr2 64186734 64190881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5539 588 683 WRKY Transcription Factor Family AT4G12020 40.206 1.38e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5539 - - mtr:MTR_3g032370 1486.86