Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5535 ATGATGGTTGAAAAGGAAGATTTGGGTTTGAGCCTAAGCTTGAACTTCCCTCAAAATCCACCACCAAATCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCCTCTTCTCCTTCTACCTACAATCTCCAAAAACCATCTTCCAATGATGCTTTCACTTCTAATTCAGATCGGGATTCGGAAACATGCAGAGGCGAAGAACGATCTCTACTCCTCCGAGGAATCGATGTGAATCGGTTACCTTCCGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCTCCAAACAGCACGGTTTCAAGTGTGAGTGGTAAACGTAGCGAAAGAGAGGTTACTGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGATGCTGAAACATCAAGGAAAAAACTTAGACTCACTAAAGATCAATCAATTATTCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAGTTGGCACTTGCAAAACAATTGGGGCTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAGGTAGATTGTGAGTTTTTGAAAAGGTGTTGTGAGAATCTGACGGATGAAAATAGGCGATTGCAAAAGGAAGTACAAGAGCTAAGAGCACTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCCACAACACTTACCATGTGCCCTTCTTGTGAGCGTGTTGCTGTTCCAACATCAGCCGTTGATGCATCCACGCGTCGTCATCCTATGGCTCCAACACACCCTCGTGCATTTCCAATGGGCCCATGGGCCACAGCTGCTCCAATACAACACAGGCCCTTTGATCCAATCCGGCCCAGATCTTAA 897 0.4337 MMVEKEDLGLSLSLNFPQNPPPNPQYLNLMSSSTHSSSPSTYNLQKPSSNDAFTSNSDRDSETCRGEERSLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPTSAVDASTRRHPMAPTHPRAFPMGPWATAAPIQHRPFDPIRPRS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5535 298 MobiDBLite consensus disorder prediction 108 136 - -
Tpr2g5535 298 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355|GO:0043565
Tpr2g5535 298 MobiDBLite consensus disorder prediction 25 57 - -
Tpr2g5535 298 MobiDBLite consensus disorder prediction 86 136 - -
Tpr2g5535 298 PANTHER - 4 289 - -
Tpr2g5535 298 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Tpr2g5535 298 CDD homeodomain 137 194 IPR001356 GO:0003677
Tpr2g5535 298 PRINTS Lambda-repressor HTH signature 164 173 IPR000047 GO:0003677
Tpr2g5535 298 PRINTS Lambda-repressor HTH signature 173 189 IPR000047 GO:0003677
Tpr2g5535 298 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Tpr2g5535 298 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 289 - -
Tpr2g5535 298 MobiDBLite consensus disorder prediction 92 107 - -
Tpr2g5535 298 SUPERFAMILY Homeodomain-like 128 194 IPR009057 -
Tpr2g5535 298 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Tpr2g5535 298 Pfam HD-ZIP protein N terminus 2 111 IPR006712 GO:0005634
Tpr2g5535 298 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Tpr2g5535 298 Gene3D - 141 191 - -
Tpr2g5535 298 Coils Coil 192 229 - -
Tpr2g5535 298 MobiDBLite consensus disorder prediction 1 66 - -
Tpr2g5535 298 SMART HOX_1 135 197 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5535 Tpr-Chr2 64129140 64131295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5535 1 298 Homeobox Transcription Factor Family AT4G16780 63.366 7.74e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g5535 HD-ZIP_N 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5535 K09338 - gmx:100787231 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5535 2 64129140 64131295 Tpr5g2610 5 48288407 48290633 PCT