Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5527 ATGGAACAAGTTTCTGTCTCAATGGACAATGAAATTGAACTAACCACTTCAATTTCTTCTTCCATTGAAAATAACAAAACCAAACCAAAAAGTGATAATAATGGGAAACACCCTTTGTATCGTGGAGTAAGAATGCGTCATTGGGGTAAATGGGTTTCTGAAATTAGAGAGCCCAAGAAAAAATCAAGAATTTGGCTAGGTAGTTTTCCGACACCCGAAATGGCAGCTATAGCCCATGATGTTGCGGCCCAAGCCATCAAAGGAAGCTCGGCTTACCTTAATTTCCCCGAATTAGCCGAACACCTCCCACGCCCCGCCACCAATTCTCCGAAGGACATTCAAGCCGCCGCCAAAGCAGCTTCAATGGACTTTCGTCATGAAGCCCAGGCCCAAGCCCATGACTTACAAGAATCGTCAAATTCATCTTTAACTGACGAGGATGACATGTTCTATGACTTGCCGGATCTCTTACTCGATACAAATAACAATTCAACAACTGAATTATATTATTCTTCAATGCCGTGGCTCGCGGCTGGAGCTGAATATTCAAACTCAGGTTTTGGGCTGGATGAGCCTTTACCGTGGGAGCCTTAA 594 0.4394 MEQVSVSMDNEIELTTSISSSIENNKTKPKSDNNGKHPLYRGVRMRHWGKWVSEIREPKKKSRIWLGSFPTPEMAAIAHDVAAQAIKGSSAYLNFPELAEHLPRPATNSPKDIQAAAKAASMDFRHEAQAQAHDLQESSNSSLTDEDDMFYDLPDLLLDTNNNSTTELYYSSMPWLAAGAEYSNSGFGLDEPLPWEP* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5527 197 MobiDBLite consensus disorder prediction 122 144 - -
Tpr2g5527 197 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Tpr2g5527 197 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Tpr2g5527 197 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Tpr2g5527 197 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Tpr2g5527 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 21 179 - -
Tpr2g5527 197 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Tpr2g5527 197 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Tpr2g5527 197 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Tpr2g5527 197 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Tpr2g5527 197 MobiDBLite consensus disorder prediction 1 28 - -
Tpr2g5527 197 MobiDBLite consensus disorder prediction 1 39 - -
Tpr2g5527 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5527 Tpr-Chr2 64030940 64031895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5527 28 193 AP2-EREBP Transcription Factor Family AT2G44940 45.673 2.91e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g5527 AP2 7.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5527 - - gmx:100812293 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5527 2 64030940 64031895 Tpr5g2619 5 48393595 48394635 PCT