Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5508 ATGGACTTGGAAACATTGCACCTTCCAAGAAAAAGCAATGCAGTTCCACAATCCACTCCGGAGATAATCGACGTCGACACCTACCGTTTATCCGTCAAGCGAGCCATCTCTGATGTCATTAATCTTTCCGATGAAGAAGACGACGATGACATTAAGATCCTCAATTTCATTCCAAAAACTATCCCTTTCGGAAAACGTAAAAGATTCGAAAACGGAGAGTCTTCAAATTCCAGAGCTGCGGCGTTTGTTTGCGAAATCTGCACTGACACTAAAACGATTAAGGATGCTTTCTTCATCAGCGGTTGCTCTCATGCTTATTGCTCAGATTGCGTGTCAATGTACATCAGTTCCAAACTTGATGATAACATCACAAATATTGGGTGTCCAGTTCCCGGGTGCAATGGTTTATTAGAAGCGGAGTTTTGTCGTTCGATTCTTAAACCCGAGGTTTTTGAACGGTGGGGTAAGGCATTGTGTGAGGCTTTGATAGATGTATCGGAGAAGTTTTATTGTCCTTTAATTTTTCGCTTGTTAACTGTGGTTAAGAAGATCTTAATGAATGAAGGTGTTGGCTGCATAGTAAAATGTAGGTTATCTAAGTGTAATTTGGTTTGA 615 0.4081 MDLETLHLPRKSNAVPQSTPEIIDVDTYRLSVKRAISDVINLSDEEDDDDIKILNFIPKTIPFGKRKRFENGESSNSRAAAFVCEICTDTKTIKDAFFISGCSHAYCSDCVSMYISSKLDDNITNIGCPVPGCNGLLEAEFCRSILKPEVFERWGKALCEALIDVSEKFYCPLIFRLLTVVKKILMNEGVGCIVKCRLSKCNLV* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5508 204 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 172 IPR031127 GO:0004842|GO:0016567
Tpr2g5508 204 ProSiteProfiles Zinc finger RING-type profile. 84 130 IPR001841 -
Tpr2g5508 204 Pfam Zinc finger, C3HC4 type (RING finger) 84 129 IPR018957 GO:0046872
Tpr2g5508 204 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Tpr2g5508 204 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 37 172 - -
Tpr2g5508 204 SUPERFAMILY RING/U-box 81 164 - -
Tpr2g5508 204 ProSiteProfiles TRIAD supradomain profile. 80 204 IPR044066 -
Tpr2g5508 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5508 Tpr-Chr2 63517259 63518031 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5508 69 172 C3H Transcription Factor Family AT2G31770 25.000 1.04e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5508 K11975 - gmx:100803898 196.052