Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5502 ATGGGTAAAGAGGAAACAAACAGATTCCCAAACCTCGACTCCTTCTACTTTTCCGGCAAGCGAAATATCCCCGATGTCATTGATCTTTCCGATGAAGACGATGACGACGACATTAAAATAATCAATTTAATTCCCAACAATACCTATTTGGGAACACGTAAAAGAAACAGCAACTTTGAAGGAGAGTGTTCATATTCAAAAGGCGGGTGGTTTTTTTGCAAACTCTGTATGGATAATAAAACGATGGGGGACGCTTTCTACATCAATGGTTGCACCGACGCTTATTGCTCTGATTGTGTGGCGAAGTACATCCGTTCAAAACTTGACGATAACATTATTAACATTCGGTGTCCATCATTCTGGTGTGAATCAGGTACGTTAGAAACAGGGTTTTGCCGTTCGATTCTTCCAACTGAGGATTTTAAACGATGGGATAAGGCGGTGTGCGAGGTTTTGTTCAATATTACGGAGAAATTCTATTGTCCCTTTGTAGACTGTTCTGCTCTTTTGATCAATGATGGAACGGAGCCTGTTAGGAATTTAGAATGTCCTAATTGTAATAGGATGCTCTGTGGACTGTGTAAGGTTCGATCTCATGAAGGATTCGGATGCAGCGAGTTCGAGAAACTGAAGAGGGACGATAAGGGGAAAGCTGTTATACTGGCTAACATTGCGGAAGATATGAGGTGGAGACAATGTCCCAAGTGCAGTGAGTATGTTGCCAAATCTGGGGGCTGCAACATCATGACATGCAGGTTTCTTTCTAGTTAA 771 0.4202 MGKEETNRFPNLDSFYFSGKRNIPDVIDLSDEDDDDDIKIINLIPNNTYLGTRKRNSNFEGECSYSKGGWFFCKLCMDNKTMGDAFYINGCTDAYCSDCVAKYIRSKLDDNIINIRCPSFWCESGTLETGFCRSILPTEDFKRWDKAVCEVLFNITEKFYCPFVDCSALLINDGTEPVRNLECPNCNRMLCGLCKVRSHEGFGCSEFEKLKRDDKGKAVILANIAEDMRWRQCPKCSEYVAKSGGCNIMTCRFLSS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5502 256 Pfam IBR domain, a half RING-finger domain 158 204 IPR002867 -
Tpr2g5502 256 Gene3D - 202 253 - -
Tpr2g5502 256 ProSiteProfiles TRIAD supradomain profile. 69 256 IPR044066 -
Tpr2g5502 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Tpr2g5502 256 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 253 - -
Tpr2g5502 256 SMART ibrneu5 142 204 IPR002867 -
Tpr2g5502 256 SUPERFAMILY RING/U-box 68 151 - -
Tpr2g5502 256 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 253 IPR031127 GO:0004842|GO:0016567
Tpr2g5502 256 SUPERFAMILY RING/U-box 222 251 - -
Tpr2g5502 256 SUPERFAMILY RING/U-box 146 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5502 Tpr-Chr2 63361528 63362298 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5502 29 253 C3H Transcription Factor Family AT2G19610 26.496 2.61e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5502 K11975 - twl:120005643 222.631