Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5500 ATGGGTCAAAAGAAAAGGAGTAACAGAGTTCCATATTTCAATGGCATGAAGTTCCTCAATTTCATTCATAATACCCCTTCCAAAAAACGTAGAAGAAACCACAACTTTGATCACTTTCAAAAGGCAGAGTCTTCAAATTCAAAAGATAGGCAGTTTTTTTGTGAAATCTGCACAGAAACTACATCAACAAGGGACGCTTTCTACCTCAGCGGTTGCTCTCATTCTTATTGCTCCGATTGTGTTGCTGTGTATATCCGTTACAAACTTGACCTTAACATTATTGACATTAACTGTCCTGTCCCCGAGTGCTGCGGTTCTTTACAAGCGGAGTTCTGCCGTTCAATTCTTCCTCGCGAGGTTTTTGAACGGTGGGACAAGGCCTTGTGCGAGGTTTTGTCCAATATTAAGGAGAAATTCTATTGTCCCTTTGCAGATTGTTCCGCTCTATTGATCAATGACGGAACTGAGGCTGTTAGTAAATTAGAATGTCCAAATTGTAATAGGATGATTTGTGCACAATGTAAGGTTCGATGGCATGATGGAATCGAATGCAGCGAGTTCAATAAACTGAACCGAGATGATAAGGCGAAAGATGTTATGCTGACTAACATTGCAAAAGATATGAGGTGGAGGCAATGTCCAAAGTGCAGAGTTTATGTTGCCAAATCTAAGAGCTGCAACGTCATGACATGCAGGTTTCTTTCTTGA 708 0.4068 MGQKKRSNRVPYFNGMKFLNFIHNTPSKKRRRNHNFDHFQKAESSNSKDRQFFCEICTETTSTRDAFYLSGCSHSYCSDCVAVYIRYKLDLNIIDINCPVPECCGSLQAEFCRSILPREVFERWDKALCEVLSNIKEKFYCPFADCSALLINDGTEAVSKLECPNCNRMICAQCKVRWHDGIECSEFNKLNRDDKAKDVMLTNIAKDMRWRQCPKCRVYVAKSKSCNVMTCRFLS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5500 235 ProSiteProfiles TRIAD supradomain profile. 50 235 IPR044066 -
Tpr2g5500 235 Pfam IBR domain, a half RING-finger domain 128 184 IPR002867 -
Tpr2g5500 235 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Tpr2g5500 235 Gene3D - 182 233 - -
Tpr2g5500 235 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 34 234 - -
Tpr2g5500 235 ProSiteProfiles Zinc finger RING-type profile. 54 102 IPR001841 -
Tpr2g5500 235 SUPERFAMILY RING/U-box 127 189 - -
Tpr2g5500 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 134 IPR013083 -
Tpr2g5500 235 SMART ibrneu5 122 184 IPR002867 -
Tpr2g5500 235 SUPERFAMILY RING/U-box 197 231 - -
Tpr2g5500 235 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 34 234 IPR031127 GO:0004842|GO:0016567
Tpr2g5500 235 SUPERFAMILY RING/U-box 49 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5500 Tpr-Chr2 63347298 63348005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5500 54 232 C3H Transcription Factor Family AT2G19610 28.191 8.57e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5500 K11975 - twl:119981634 249.21