Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5499 ATGGGTCAAGAAAAAAGAACAAGAACTAGAAGAAGGAACAGAGTTCCACGCATCGACTCCGGCTGCTTTTTTCCCAAGCGAAAAATCTCCGACTCCTTATTTGATTTTTCCGATGAAGAAAACGACTACGTGAACATCCTCATACATAGCCTTTCTAGAAAACCTAAAAGAAACAACAACTTTGAAAAAGGAGAGTCTTCAAATGCAAAAGATAGGCTGTTTTATTGCAAAATCTGCATGGATACTAAAAAGTTGAGGGACGCTTTCTGCCTCAGCGGCTGCAATCACGTTTATTGCTCCGATTGTGTTGCAATATACATCCGTTACAAACTTGACGATAAAATTATTAACATTAGGTGTCCTTTTCCCGAGTGTCGTGGTTCATTAGAACCAGAGTTTTGCCGTTCGATTCTTCCAACCGATGATTTTAAACGATGGAATAAGGCAGTGTGCGAGGTTTTGTTCAATATTACGGAGAAATTCTACTGTCCCTTTGCGGACTGTTCGGCTCTTTTGATCAATGATGGAACGGAGGCTGTGAGGAATTTAGAATGTCCTAATTGTAATAGGATGCTCTGTGGACAATGTAAGGTTAGATGGCATGAAGGGATCGAATGCAGCGAGGTTAAGAAATTGAAGCGGGGCGATAAGGGGAAAGATATTATGCTGACAAACATTGCAAAAGATATGAAGTGGAGACAATGTCCAAAGTGCAGACTTTATGTTGCCAGATCTGAGAGCTGCAACATCATGAAATGCAGGTTTTATTCTAGTTAA 777 0.4041 MGQEKRTRTRRRNRVPRIDSGCFFPKRKISDSLFDFSDEENDYVNILIHSLSRKPKRNNNFEKGESSNAKDRLFYCKICMDTKKLRDAFCLSGCNHVYCSDCVAIYIRYKLDDKIINIRCPFPECRGSLEPEFCRSILPTDDFKRWNKAVCEVLFNITEKFYCPFADCSALLINDGTEAVRNLECPNCNRMLCGQCKVRWHEGIECSEVKKLKRGDKGKDIMLTNIAKDMKWRQCPKCRLYVARSESCNIMKCRFYSS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5499 258 ProSiteProfiles TRIAD supradomain profile. 72 258 IPR044066 -
Tpr2g5499 258 ProSiteProfiles Zinc finger RING-type profile. 76 124 IPR001841 -
Tpr2g5499 258 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 38 255 IPR031127 GO:0004842|GO:0016567
Tpr2g5499 258 ProSitePatterns Zinc finger RING-type signature. 94 103 IPR017907 -
Tpr2g5499 258 Pfam IBR domain, a half RING-finger domain 159 206 IPR002867 -
Tpr2g5499 258 SUPERFAMILY RING/U-box 219 253 - -
Tpr2g5499 258 SMART ibrneu5 144 206 IPR002867 -
Tpr2g5499 258 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 38 255 - -
Tpr2g5499 258 SUPERFAMILY RING/U-box 147 211 - -
Tpr2g5499 258 Gene3D - 203 255 - -
Tpr2g5499 258 SUPERFAMILY RING/U-box 71 153 - -
Tpr2g5499 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5499 Tpr-Chr2 63335513 63336289 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5499 76 254 C3H Transcription Factor Family AT2G19610 27.660 6.25e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5499 K11975 - mnt:21402499 243.817