Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5497 ATGAGTGTCAAAACGACAACCAAAATAGGCGTCGTTTCGCCATCCACGGCAGAGATAATCGACGTCGAAACTTTTCATTCCTCTCCGACCACCTCGAAAACAACAATCACCGCCGTCATCAATCTTTCCGACGAAGAAGACGATGACGATGTCAGAATCCTCAATTTCATTCCCAAAAAAACCACTTTCGGAAAACGGAGAACAATCAAAACTGAAAAAGGTGAGTCTTCGAAATCCAACAACGACGTTCCGTTTATTTGCGAAATTTGTACGGAGACGAAAACCACAAAAGATGCTTTCTTCATCATCGGTTGTTCGCATGCTTATTGCTCCGATTGTGTTACTATGTACGTTGTTTCTAAGCTGGATGATAATGTGATCAATGTGAGGTGTCCTGTTTCTGGTTGTAGTGGTTTATTAGAAGCCGAGTATTGTCGTTCGATTCTTCCAGCCGAGGTTTTCGATCGGTGGGGGAAGGCATTGTGTGAGGCGATGTTTGATGTTTCGGAGAAATTTTACTGTCCGTTTGCTGATTGTTCTGCTCTTTTGATTAAGGATGGGACGGAGGAAGTTACAGCTTCGGAGTGTCCAAATTGTAGGAGGTGTTTTTGTGCAAAATGTAGGGTTCCGTGGCATGATGGGATCGAATGTAGCGATTTTGAGAAGCTGCATGCAGATGAGAGGGAAAAAGAAGATGTTATGTTGATGAAACTTGCTAAGGATATGAAGTGGAGACGATGCCCTAATTGTAGGTATTATGTTGCAAAGTCGACGGGTTGCTTGTTCATGAAATGCAGGTGTGGAGTTGCCTTCTGTTACAACTGTGGAGCTCTTAACACAACTAATATCCATTATTGCAGCATATGTAAACACTAA 876 0.4269 MSVKTTTKIGVVSPSTAEIIDVETFHSSPTTSKTTITAVINLSDEEDDDDVRILNFIPKKTTFGKRRTIKTEKGESSKSNNDVPFICEICTETKTTKDAFFIIGCSHAYCSDCVTMYVVSKLDDNVINVRCPVSGCSGLLEAEYCRSILPAEVFDRWGKALCEAMFDVSEKFYCPFADCSALLIKDGTEEVTASECPNCRRCFCAKCRVPWHDGIECSDFEKLHADEREKEDVMLMKLAKDMKWRRCPNCRYYVAKSTGCLFMKCRCGVAFCYNCGALNTTNIHYCSICKH* 292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5497 291 Pfam Zinc finger, C3HC4 type (RING finger) 87 132 IPR018957 GO:0046872
Tpr2g5497 291 SMART ibrneu5 227 289 IPR002867 -
Tpr2g5497 291 SMART ibrneu5 155 217 IPR002867 -
Tpr2g5497 291 Pfam IBR domain, a half RING-finger domain 170 217 IPR002867 -
Tpr2g5497 291 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 79 266 IPR031127 GO:0004842|GO:0016567
Tpr2g5497 291 SUPERFAMILY RING/U-box 84 166 - -
Tpr2g5497 291 SUPERFAMILY RING/U-box 228 287 - -
Tpr2g5497 291 ProSiteProfiles TRIAD supradomain profile. 83 291 IPR044066 -
Tpr2g5497 291 SUPERFAMILY RING/U-box 161 222 - -
Tpr2g5497 291 ProSitePatterns Zinc finger RING-type signature. 105 114 IPR017907 -
Tpr2g5497 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 170 IPR013083 -
Tpr2g5497 291 ProSiteProfiles Zinc finger RING-type profile. 87 133 IPR001841 -
Tpr2g5497 291 Gene3D - 215 291 - -
Tpr2g5497 291 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 79 266 - -
Tpr2g5497 291 SMART ring_2 87 134 IPR001841 -
Tpr2g5497 291 SMART ring_2 247 289 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr2g5497 Tpr-Chr2 63148078 63152438 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5497 87 277 C3H Transcription Factor Family AT2G19610 29.703 5.28e-20 87.4