Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g5497 | ATGAGTGTCAAAACGACAACCAAAATAGGCGTCGTTTCGCCATCCACGGCAGAGATAATCGACGTCGAAACTTTTCATTCCTCTCCGACCACCTCGAAAACAACAATCACCGCCGTCATCAATCTTTCCGACGAAGAAGACGATGACGATGTCAGAATCCTCAATTTCATTCCCAAAAAAACCACTTTCGGAAAACGGAGAACAATCAAAACTGAAAAAGGTGAGTCTTCGAAATCCAACAACGACGTTCCGTTTATTTGCGAAATTTGTACGGAGACGAAAACCACAAAAGATGCTTTCTTCATCATCGGTTGTTCGCATGCTTATTGCTCCGATTGTGTTACTATGTACGTTGTTTCTAAGCTGGATGATAATGTGATCAATGTGAGGTGTCCTGTTTCTGGTTGTAGTGGTTTATTAGAAGCCGAGTATTGTCGTTCGATTCTTCCAGCCGAGGTTTTCGATCGGTGGGGGAAGGCATTGTGTGAGGCGATGTTTGATGTTTCGGAGAAATTTTACTGTCCGTTTGCTGATTGTTCTGCTCTTTTGATTAAGGATGGGACGGAGGAAGTTACAGCTTCGGAGTGTCCAAATTGTAGGAGGTGTTTTTGTGCAAAATGTAGGGTTCCGTGGCATGATGGGATCGAATGTAGCGATTTTGAGAAGCTGCATGCAGATGAGAGGGAAAAAGAAGATGTTATGTTGATGAAACTTGCTAAGGATATGAAGTGGAGACGATGCCCTAATTGTAGGTATTATGTTGCAAAGTCGACGGGTTGCTTGTTCATGAAATGCAGGTGTGGAGTTGCCTTCTGTTACAACTGTGGAGCTCTTAACACAACTAATATCCATTATTGCAGCATATGTAAACACTAA | 876 | 0.4269 | MSVKTTTKIGVVSPSTAEIIDVETFHSSPTTSKTTITAVINLSDEEDDDDVRILNFIPKKTTFGKRRTIKTEKGESSKSNNDVPFICEICTETKTTKDAFFIIGCSHAYCSDCVTMYVVSKLDDNVINVRCPVSGCSGLLEAEYCRSILPAEVFDRWGKALCEAMFDVSEKFYCPFADCSALLIKDGTEEVTASECPNCRRCFCAKCRVPWHDGIECSDFEKLHADEREKEDVMLMKLAKDMKWRRCPNCRYYVAKSTGCLFMKCRCGVAFCYNCGALNTTNIHYCSICKH* | 292 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g5497 | 291 | Pfam | Zinc finger, C3HC4 type (RING finger) | 87 | 132 | IPR018957 | GO:0046872 | |
Tpr2g5497 | 291 | SMART | ibrneu5 | 227 | 289 | IPR002867 | - | |
Tpr2g5497 | 291 | SMART | ibrneu5 | 155 | 217 | IPR002867 | - | |
Tpr2g5497 | 291 | Pfam | IBR domain, a half RING-finger domain | 170 | 217 | IPR002867 | - | |
Tpr2g5497 | 291 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 79 | 266 | IPR031127 | GO:0004842|GO:0016567 | |
Tpr2g5497 | 291 | SUPERFAMILY | RING/U-box | 84 | 166 | - | - | |
Tpr2g5497 | 291 | SUPERFAMILY | RING/U-box | 228 | 287 | - | - | |
Tpr2g5497 | 291 | ProSiteProfiles | TRIAD supradomain profile. | 83 | 291 | IPR044066 | - | |
Tpr2g5497 | 291 | SUPERFAMILY | RING/U-box | 161 | 222 | - | - | |
Tpr2g5497 | 291 | ProSitePatterns | Zinc finger RING-type signature. | 105 | 114 | IPR017907 | - | |
Tpr2g5497 | 291 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 170 | IPR013083 | - | |
Tpr2g5497 | 291 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 133 | IPR001841 | - | |
Tpr2g5497 | 291 | Gene3D | - | 215 | 291 | - | - | |
Tpr2g5497 | 291 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 79 | 266 | - | - | |
Tpr2g5497 | 291 | SMART | ring_2 | 87 | 134 | IPR001841 | - | |
Tpr2g5497 | 291 | SMART | ring_2 | 247 | 289 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g5497 | Tpr-Chr2 | 63148078 | 63152438 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g5497 | 87 | 277 | C3H Transcription Factor Family | AT2G19610 | 29.703 | 5.28e-20 | 87.4 |