Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5496 ATGTGTGAAACTCAAATTCATTTCTTATGCCTTTTATTATTTTATATTAATAATAATAACAAACTTATTCATTTTTCAATTTTCCTTTCTGAGTTTACTGTTTTGTCAAAAAGGTTAATAATCAAATCAAATCACAACACAATCGGTGTTTCAAGACATAGTCTCCTTGCTGTTCTTAGTGGTAAATCACATGACAGTAAACAAAAGCAGAAGCAGAAGCAGAAGCAAGATGATGCTTCTGAGGGTCAATTTTCATCATACCCCTTTCCCGAGCTCTCTTCGTCCGGGCGTCTCGAGGTTAAATTATTGATTAAACCTACTTACGATGAACTTGGTCGAGTTCTAGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAGGGGAGAAATTGGGTCTCTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCCTTGTGTGGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCCAAGGGCGAAAAATTGGCAGAGGCACTCCATTCGGAGGGAGTACCTTACACTATATACTGGAAAAATGATTTTTCAAAGTACGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCACAAAGTACATCCAGCCATACATGGGATGCGTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGTGCGGAAAACAATGTCGTATCACACGACAGTCGGAAGGGCGGCGGTAAGCTCGGGCCACAAATTCTCGGGGAACCTCCTAACATAGAAGTTGGTCCATGTGAAGCAAACATGAAGGAAGAAGAAGATTCACCTGAGACTAGTTCTTCTATAAAGATATATGATGATGATGTGAATACGAGATTTCTTGTTTGTGGATTTCCCTGCACATTGGATGCATGCTTATTGGGTTCGTTAGAGGATGGACTCAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCGCCACCTCTCCAGGCAGGAACTTTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACAAGCAGTTCTGCTCATATATCACTTTTAGTGTCCGGTAGTGCGGACGCTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAACTCACCGAGAATAGCCAACTTGTTCAGGCAATTCCTAGTCACGAACAAAACAAATTACCTTCATATGTGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTAAGACAACTTGCACCGAATCTGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGGCCGTTGCATCTTTTACTAAAGATGATGCAGAACGTCTTCTTTTCTTTTGTTCTGTGAAGGAGAAAGATAACTTATCCAAAGATATCGTTTTCTCTGGTCACCCTAGTTGGTTGATGCCTCCAGCACCTAGTCGAAAAAGATCCGAACCATGCTCTAGAATAAAATCTATTAACGCTAGTGGCGTTGAAGATATTGGCAGTGATAGACAGAAATTAAGTTTTGGTGCCATGAGGCCAATCCCTCAGTCGCATCGTCAAAAGCTTCTCCCCTTTTCTGGATTTTCCGAGGTAGAAAGATATGACAGAGACCATGGAAAATCAAATCAGCTACTTGCTCCAATTAAGCACAATGGTTTAGGTCCCCATTCTGTTACAAACAGGAAATCTGTTTCAAACGCGTTTCAAGCTCACCAAATAATTTCTTTGAATCCATTACCTATGAAAAAGCATGGTTGTGATAGAGCTCCGATACGAGCTTGCTCAGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGGCATACTCGCCTCATTCCCCAAGGCGGATTTGCTGAGTTCCCTGACGCCGTCCTGAATGCTAAACGGCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACAGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTTTTGGAATATGAATTAGCTCATGATGATGTAGATGGAGAGTGCTGCTTATTGTGTCACAGTAGTGCAGCTGGTGACTGGGTGAACTGTGGTTTATGTGGTGAGTGGGCTCATTTTGGTTGTGATAGGCGGCAGGGACTCGGAGCATTTAAGGACTATGCAAAAACTGACGGGCTCGAATACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAATCGCATAAAACTACAAATGGCTACTAA 2388 0.4162 MCETQIHFLCLLLFYINNNNKLIHFSIFLSEFTVLSKRLIIKSNHNTIGVSRHSLLAVLSGKSHDSKQKQKQKQKQDDASEGQFSSYPFPELSSSGRLEVKLLIKPTYDELGRVLEQLQPDFVYLQGQQLDDRGEIGSLVWEDFDLSTPEALCGLFSSKLPNTVYLETPKGEKLAEALHSEGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLAQASFRLYCAENNVVSHDSRKGGGKLGPQILGEPPNIEVGPCEANMKEEEDSPETSSSIKIYDDDVNTRFLVCGFPCTLDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPSHEQNKLPSYVPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNLSYRCLVMLGVASIQGLAVASFTKDDAERLLFFCSVKEKDNLSKDIVFSGHPSWLMPPAPSRKRSEPCSRIKSINASGVEDIGSDRQKLSFGAMRPIPQSHRQKLLPFSGFSEVERYDRDHGKSNQLLAPIKHNGLGPHSVTNRKSVSNAFQAHQIISLNPLPMKKHGCDRAPIRACSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGLCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSHKTTNGY* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5496 795 CDD PHD_ARID4_like 728 779 - -
Tpr2g5496 795 MobiDBLite consensus disorder prediction 63 83 - -
Tpr2g5496 795 Pfam ARID/BRIGHT DNA binding domain 621 718 IPR001606 GO:0003677
Tpr2g5496 795 Gene3D - 615 721 IPR036431 GO:0003677
Tpr2g5496 795 SMART ARID_2 615 718 - -
Tpr2g5496 795 ProSiteProfiles ARID domain profile. 618 722 IPR001606 GO:0003677
Tpr2g5496 795 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 29 795 - -
Tpr2g5496 795 SMART bright_3 619 723 IPR001606 GO:0003677
Tpr2g5496 795 MobiDBLite consensus disorder prediction 64 78 - -
Tpr2g5496 795 CDD ARID 620 718 - -
Tpr2g5496 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 785 IPR013083 -
Tpr2g5496 795 SUPERFAMILY FYVE/PHD zinc finger 721 786 IPR011011 -
Tpr2g5496 795 SUPERFAMILY ARID-like 619 733 IPR036431 GO:0003677
Tpr2g5496 795 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 29 795 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5496 Tpr-Chr2 63078260 63085545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5496 51 794 ARID Transcription Factor Family AT3G43240 64.075 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr2g5496 ARID 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5496 - - gmx:100775894 1245.34