Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5494 ATGGAAAACACCACCAATTCTCCACCAAACAACTCTTCCTCACACAACCTTCTCATAACAATAACGGTTTTCACCGTTACCGTCACCGTTTTCCTTATTCTCTACCTTATACTCCGTTACCGTTGCAATTGCCTCCGTCGCCGTTCCTCTCCGTCATCCTCCACAGTTTTCTCCTCCTCCTCCTCGGGAAATAGAATTTCGCCGGAGACGGAGACAACTTCGTCTTCTATAGTTGATTCTCTCCCGTTGTTCACATTCTCTTCCATCACACGCCGTTCTTCCTCCGTCGTCTCCCTCGATTGCGCCGTTTGTTTGTCCAAGTTTGAACAAACCGATCTCCTCCGTCTCCTCCCTCTCTGCTGTCACGCGTTCCACACCGAATGTATCGATGCTTGGCTTCGTTCGAATCTTACGTGTCCACTTTGCCGATCAGCCGTCGTTGTTTCAGAGTCCGAGCTTATGAAGATTTTCCGGCCGTCTTCTGCTTCTTCCGGAAACAGCTTCCGTTTGGAGATAGGAAACGTCAGTAACCGTCGTGGAGACGGAACCGCCGCGTCTAACAATGTCAGTGGAGAAACTGATCGGAGATTGTACTCCGTCGGTGCGTTCGAGTATTTCGTTGACGAGGAAGCGGAGATTCCGTTTGGTCACACTAATCGGAGAATTGTTTCCGGTGAGAAAGATGATTCTCCGGCGTCGGAGGTTCCGGTGGTTTCTCAGGCGAGTTTGGTCGGTGAAGGTAGTTGGTTGAAGGATTATGTTGATAATCTATCGAATTTGGTTTCATTTGGAGGTTCTGGAAGGTTCTTCACTGGGAGCAGTAGACGAAACGACGTCGTTGGTGTTGATTATGAAGTTCAAGCTAATCATGGTTTTGGGGAAGAAATTACGGAAATGTTTAGATGGATTTCAGGAGTTTGA 921 0.4821 MENTTNSPPNNSSSHNLLITITVFTVTVTVFLILYLILRYRCNCLRRRSSPSSSTVFSSSSSGNRISPETETTSSSIVDSLPLFTFSSITRRSSSVVSLDCAVCLSKFEQTDLLRLLPLCCHAFHTECIDAWLRSNLTCPLCRSAVVVSESELMKIFRPSSASSGNSFRLEIGNVSNRRGDGTAASNNVSGETDRRLYSVGAFEYFVDEEAEIPFGHTNRRIVSGEKDDSPASEVPVVSQASLVGEGSWLKDYVDNLSNLVSFGGSGRFFTGSSRRNDVVGVDYEVQANHGFGEEITEMFRWISGV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5494 306 Pfam Ring finger domain 100 143 IPR001841 -
Tpr2g5494 306 SMART ring_2 101 142 IPR001841 -
Tpr2g5494 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Tpr2g5494 306 CDD RING-H2_PA-TM-RING 100 143 - -
Tpr2g5494 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 281 - -
Tpr2g5494 306 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 281 - -
Tpr2g5494 306 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Tpr2g5494 306 SUPERFAMILY RING/U-box 79 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5494 Tpr-Chr2 63028152 63029643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5494 59 170 C3H Transcription Factor Family AT4G28890 46.429 8.60e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5494 K10663 - gmx:100804962 296.204