Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5489 ATGGCGTTCCAAGATTTTGATCTTGTATCAGAAAGGCGAAAAACTAACGCTGCCAAACACCTTAGGAAAAAGATTTTGTTCGGTGTAACTTCCGTCCTTTTAGTAGCATGTGTTATAGCAGCTGCAGCATTTGTTATTGTCAAACAAACCGGTAGAGACCAAGAGAAGGCTGTTCCAAAAGCAAAGCCCGAAGGGCGGGTAGATCAAACATCGAGGCTTGTGAAAGTGTTGTGCAGTAATTCGAATTACAAGGCAAAATGTGAAACCACACTTACCGAGGCATTGAAAAAAGATCCTAAATTGTCAGAACCTAAGGATCTTCTAATGGTTTCCATGGTAATCGCCGAGAATGAAATTAACAAGGCGTTCAACGAAACTGGGAAAATGAAATTCGCTTCCGAGGAAGAAAAGGGAGCTTACGAAGATTGTAAGGAATTGTTTGCGGATGCTAAAGAAGAAATGGGATTGTCTATCAATGAAGTTGGTCAAGTTGATGTTGACAAACTATCTTCAAAAACAGCTGATGTGAACAACTGGCTTAGTGCTGTTATGTCTTACCAACAAACTTGCATTGATGGTTTCCCCGAAGGCGATTTTAAGAAAAAATTGGAGAAGATGTTCACCGAATCAAGGGAACTTGTTAGCAATTCAATGGCGGTTGTTTCACAAGTTTCTCAAATTGTTAATGCATTCAGTGGTGGAATTTCTGGATTCAAATTACCTTGGGGTAAAATTGATGCACCAGCTCCCGCTCCCGTTGCTGGTGCTAAGCTCAATCTTGCCGGTGCTCCTGCTGGTTCTCCTGGTGCTGCACCTGTTGGTGCTCCCGGTGCTGAACCAATTTTCCTCGCTCCAGCTGGTTCTCCTGACGCTGCACCTGTTGGTGCTCCCGGTGCTGCTCCAGTTGCTGCCGCCGATGCTCCTGCTTGGGCTTCACCTGTTCTTGAGTTGCCTGGATCAACTGAGAAACCTACTCCTAATGTCACCGTCGCTCAAGATGGTAGTGGAGACTTCAAAACCATCTCCGATGCTTTGGCTGCTATTCCAGCCAAATACGAAGGAAGGTATGTTGTGTATGTTAAGGAAGGAGTGTACGATGAGTTGGTTACAGTGACAAAGAAAATGGTGAACCTTACCATGTATGGTGATGGTGGTTTAAAGAGTATCATCACCGGCAACAAGAATTACGTCGATGGAGTCCGAACTTTCCAAACTGCGTCATTCGTGGTACTTGGCGATGGATTCTTGGGCAGAGACATGGGATTCAGAAACACAGCCGGTGCCATCAAGCATCAAGCCGTGGCCGCCAGAATCCAAGCAGATCAAGCCATATTTGTCAACTGCAACTTCGAAGGTTATCAAGACACATTGTACGCACAAACCCACAGACAATTCTACCGCGACTGTATCATTTCTGGCACAATCGATTTCATCTTTGGTGACGCATCCGCAGTCTTCCAAAACTGCCAAATGATTATTAGAAAGCCACTCGACAACCAACAAAACATCGTCACCGCACAAGGAAGACTCGACAAACAAGAAACCACTGCATTCGTGCTACAAAAATGTGTCTTCAAGGGCGAAGATGGCCTTCCACCAACAACCAAGAATTACCTCGGAAGACCATGGAAGGAATATTCAAGGACAATTATCATGGAATCCGACATTGGCGGTTTGATTCATCCCGACGGTTGGTTACCTTGGGAAGGTGATTTTGCATTAACCACATTGTATTATGGTGAGTTTAACAATGTTGGTGCTGGTGCTAATACTAATGCAAGAGTTAAATGGATTGGACGCAAAGATATCAACCGGGATGAGGCTATTACTTATACCGTTGAACCATTCTTGCAAGGAACATGGATCAATGGTACAGGTGTTCCAGCTCAATTAGGCTTGTACAATTAA 1908 0.4439 MAFQDFDLVSERRKTNAAKHLRKKILFGVTSVLLVACVIAAAAFVIVKQTGRDQEKAVPKAKPEGRVDQTSRLVKVLCSNSNYKAKCETTLTEALKKDPKLSEPKDLLMVSMVIAENEINKAFNETGKMKFASEEEKGAYEDCKELFADAKEEMGLSINEVGQVDVDKLSSKTADVNNWLSAVMSYQQTCIDGFPEGDFKKKLEKMFTESRELVSNSMAVVSQVSQIVNAFSGGISGFKLPWGKIDAPAPAPVAGAKLNLAGAPAGSPGAAPVGAPGAEPIFLAPAGSPDAAPVGAPGAAPVAAADAPAWASPVLELPGSTEKPTPNVTVAQDGSGDFKTISDALAAIPAKYEGRYVVYVKEGVYDELVTVTKKMVNLTMYGDGGLKSIITGNKNYVDGVRTFQTASFVVLGDGFLGRDMGFRNTAGAIKHQAVAARIQADQAIFVNCNFEGYQDTLYAQTHRQFYRDCIISGTIDFIFGDASAVFQNCQMIIRKPLDNQQNIVTAQGRLDKQETTAFVLQKCVFKGEDGLPPTTKNYLGRPWKEYSRTIIMESDIGGLIHPDGWLPWEGDFALTTLYYGEFNNVGAGANTNARVKWIGRKDINRDEAITYTVEPFLQGTWINGTGVPAQLGLYN* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5489 635 ProSitePatterns Pectinesterase signature 2. 471 480 IPR033131 -
Tpr2g5489 635 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 224 IPR035513 -
Tpr2g5489 635 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 225 IPR035513 -
Tpr2g5489 635 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 633 - -
Tpr2g5489 635 TIGRFAM PME_inhib: pectinesterase inhibitor domain 68 224 IPR006501 GO:0004857
Tpr2g5489 635 PANTHER PECTINESTERASE 14 633 - -
Tpr2g5489 635 Pfam Plant invertase/pectin methylesterase inhibitor 73 219 IPR006501 GO:0004857
Tpr2g5489 635 Pfam Pectinesterase 327 619 IPR000070 GO:0030599|GO:0042545
Tpr2g5489 635 Gene3D - 321 633 IPR012334 -
Tpr2g5489 635 SUPERFAMILY Pectin lyase-like 324 628 IPR011050 -
Tpr2g5489 635 CDD PMEI-like_3 77 225 - -
Tpr2g5489 635 SMART PMEI_2 69 220 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5489 Tpr-Chr2 62834349 62837104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5489 306 635 Carbohydrate Esterase AT2G26450 59.347 7.31e-143 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5489 - - gmx:100807628 814.683