Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5488 ATGAATGTCACTATCCAAACCCAAACAACATTATTTAAACAAGTCAGATTCTCAACTTCTTCTATCTTACTTTTTCATAAACATTTCATGGCTTCCTCATCTCACAAACTCTTCCTACTTCTTTTTACAATCATTTTCTCACTTACTTTACCTCTCCACACAAACTCTTCCACAACCACAACCACAACATTAAATCTCAAACTTTCTTCCTTAAAATGTTTCTGCAAAACAACACCATACCCAAAACTTTGTTTCAATTCACTAAAACTCTCCATATCAATAAACATTAGTCCAAACATCTTAACCTACCTCCTTCAAACACTTCAACTAGCAATATCTGAAACCACGAAGCTCACTAATCTTTTCCACGATGTAGGAAACACGAACATCGTAGAGAAACAACGAGGATCAATTCAAGATTGCAAGGAGCTTCATCAATCAACCTTAACTTCATTGCAAAGATCGTTATCCGGAATTCGTTCCTCGAACAAAAGAAAATTAGCCGATGCCAGAATCTATCTTAGTGCAGCCGTTACCAACAAAAACACATGTTTAGAAGGACTTGATTTTACTTCTGGTAACCTTAAACAAGTTCTTGTGGATTCTGTCATTAACACTTACAAACATGTAAGTAATTCACTTTCTATGCTTTCTAATCATGGAACTGAGACTTCAAATCAAAAGGGTCACAAGAAAAAACTGGTTTCTTCAAAATGGTTGTCAAAACGCTTAGATTTGGATGAATATGATCCAAACGAACTGCTTGTTGTGGCTACAGATGGAACTGGGAACTTTAGCACAATCACTGATGCTATAAACTTTGCTCCAAATAATAGCATGATTAGAACAGTGATTTATGTTAAAGAAGGGATTTATGATGAAAATGTTGAAATACCAAGTTATAAAACTAACATTGTAATGCTTGGTGATGGAAGTGATTCTACTGTCATCACTGGTAACAGAAGTGTTGCTGATGGATGGACCACTTTCAGATCTGCAACATTAGCTGTATCTGGTGATGGTTTTCTTGCAAGAGACATAGCATTTGAGAACAGAGCTGGGCCAGAGAAGCATCAAGCAGTTGCATTAAGAGTAAATGCAGACTTAACAGCATTTTACAAATGTGCAATTTATGGTTACCAAGACACACTTTATGTTCACTCATTTAGACAATTTTACAGAGAATGCGACATTTACGGTACCATAGATTTCATATTTGGTAACGCGGCAGTAGTTTTACAAGAATGTGACATTGTATCAAGAATGCCATTACCTGGTCAATTCACAGTTATAACCGCACAATCGCGAGATAACCCTGATGAATATACAGGAATCTCAATCCAAAACTGTTCAATTATAGCTACTGATGAACTTTATTCAAACTCTAGTAAATTCAAGAGTTACCTTGGAAGGCCATGGAGGGTATTTTCAAGAACTGTTTTCATTGAATCTTATATCGATGATTTTATTGATCAAAAGGGTTGGACAAAATGGTCTAATGATCAAGGTTTGGATACTTTGTTTTATGGTGAGTACCAAAATTATGGACCTGGTTCGAAGATTGATAATCGTGTTGAATGGCTTGGTTACCATTTAATGGATTATAATGATGCATATAATTTTACAGTTTCAGAGTTTATTACCGGTGATGAATGGCTTGAGTCTACTTCAGTTCCTTATGATGACGGGATTTGA 1695 0.3563 MNVTIQTQTTLFKQVRFSTSSILLFHKHFMASSSHKLFLLLFTIIFSLTLPLHTNSSTTTTTTLNLKLSSLKCFCKTTPYPKLCFNSLKLSISINISPNILTYLLQTLQLAISETTKLTNLFHDVGNTNIVEKQRGSIQDCKELHQSTLTSLQRSLSGIRSSNKRKLADARIYLSAAVTNKNTCLEGLDFTSGNLKQVLVDSVINTYKHVSNSLSMLSNHGTETSNQKGHKKKLVSSKWLSKRLDLDEYDPNELLVVATDGTGNFSTITDAINFAPNNSMIRTVIYVKEGIYDENVEIPSYKTNIVMLGDGSDSTVITGNRSVADGWTTFRSATLAVSGDGFLARDIAFENRAGPEKHQAVALRVNADLTAFYKCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECDIVSRMPLPGQFTVITAQSRDNPDEYTGISIQNCSIIATDELYSNSSKFKSYLGRPWRVFSRTVFIESYIDDFIDQKGWTKWSNDQGLDTLFYGEYQNYGPGSKIDNRVEWLGYHLMDYNDAYNFTVSEFITGDEWLESTSVPYDDGI* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5488 564 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Tpr2g5488 564 PANTHER PECTINESTERASE 35 563 - -
Tpr2g5488 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 218 IPR035513 -
Tpr2g5488 564 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Tpr2g5488 564 Pfam Plant invertase/pectin methylesterase inhibitor 72 216 IPR006501 GO:0004857
Tpr2g5488 564 Gene3D - 251 564 IPR012334 -
Tpr2g5488 564 CDD PMEI-like_3 74 219 - -
Tpr2g5488 564 Pfam Pectinesterase 255 550 IPR000070 GO:0030599|GO:0042545
Tpr2g5488 564 SMART PMEI_2 66 216 IPR006501 GO:0004857
Tpr2g5488 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 219 IPR035513 -
Tpr2g5488 564 PANTHER PECTINESTERASE 35 563 - -
Tpr2g5488 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 44 220 IPR006501 GO:0004857
Tpr2g5488 564 SUPERFAMILY Pectin lyase-like 253 561 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5488 Tpr-Chr2 62767184 62770064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5488 63 564 Carbohydrate Esterase AT2G26440 64.933 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5488 - - gmx:102665651 792.727