Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5480 ATGGCATTTTCTTCAACACAAAAGTTACAACTATCTCAAAAAAAACCAATACAAACTCTCATCACAACATTATCATTCATTTTAACATTGTTGTTATGCAGTTCAGTACTGTGTGCTAGTGTTCCCGCAAGAACCTCTGGTGGATTTGAGTTTCTTAAGGTTGCTCCATCTGAATTTGTTGGGACAGTGAAAGATGTAGTTGAAATTTTGCAAGATGTTACTTCAATTCTTAATGAATTTGGTGGTAGTGGATTTGGTGATTCACGTCTCTCTAATGCTGTTTCTGATTGCATTGAAATGCTTGACCTTTCCTCTGATGCACTTACTTGGTCGGTTGATGCTACTCAGACACCCAAAGGTAAGCATAATAGTACTGGAAATGTGAGCTCAGATGTGAGAACATGGTTAAGTGCTGCACTTGCAAATCCAGAGACATGCATGGATGGATTTGAAGGTACCAATGGCATTGAGAGTCAATTAGTGGCCACTGGCCTAAGCCAAATGATGTCATTGCTCAAAGATCTTCTCACACAAGTTGACCCTAAATTTGATAGCTTCGCGCAAAAAGGTCAATTTCCTTCGTGGGTTAAACGAGAGGATAGAAAGCTCTTGCAGGTAAATGGAGTGGGTTCGGATATCATTGTTGCTCTTGATGGGAGCGGTAATTTTACAAATGTGATGGATGCGGTGCATGCGGCTCCTGATTATAGCATGAAACGTTATGTTATACACATAAAAAAAGGTGTTTATATTGAAAATGTTGAAATCAAGAAGAAGAAATGGAACCTCATGATGGTTGGAGATGGAATGGATGCCACAATTATCTCGGGTAATCGGAGCTTCATTGACGGGTGGACCACATTCAGATCGGCTACCTTTGCTGTTAGTGGCAGAGGATTCATCGCACGAGACATCACTTTTAAGAACACCGCAGGTCCTGAGAAGCACCAAGCAGTGGCACTAAGATCCGACTCTGACCTCTCTGTATTCTATCGATGTGGAATTTCCGGTTACCAGGACAGCCTCTATACTCACACCATGCGCCAATTCTATAGAGAATGCAAAATAAGTGGCACTGTGGATTTCATCTTTGGAGATGCCACAACTCTCTTCCAAAATTGTCAAATTCTAGTCAAGAAAGGGTTACCAAATCAAAAGAACACAATCACAGCACAAGGAAGAAAAGACCCGAATGAACCGACTGGTTTCTCAATCCAATTTTGCAACATCACTGCAGATTCTGACCTTCTACCTTCTGTTAATTCCACCTGGACATATCTTGGAAGACCGTGGAAACAATATTCGAGAACAATTTTCATGCAATCTCACATAAGTGATGTGTTGAGGCCAGAAGGGTGGCTAGAATGGAATGGAGATTTTGCATTGGATACATTGTACTATGCAGAGTACATGAATTATGGGCCAGGAGCCGGACTAAATAAGCGAGTTAAATGGCCGGGGTATCACATTATGAATGATTCCAATCAAGCTAGTAACTTCACGGTGACCCAATTTATAGAGGGGAATCTGTGGTTGCCTACAACAGGTGTAGCATTCACTGCTGGACTTGGAGTTTAA 1578 0.4144 MAFSSTQKLQLSQKKPIQTLITTLSFILTLLLCSSVLCASVPARTSGGFEFLKVAPSEFVGTVKDVVEILQDVTSILNEFGGSGFGDSRLSNAVSDCIEMLDLSSDALTWSVDATQTPKGKHNSTGNVSSDVRTWLSAALANPETCMDGFEGTNGIESQLVATGLSQMMSLLKDLLTQVDPKFDSFAQKGQFPSWVKREDRKLLQVNGVGSDIIVALDGSGNFTNVMDAVHAAPDYSMKRYVIHIKKGVYIENVEIKKKKWNLMMVGDGMDATIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFKNTAGPEKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTLFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADSDLLPSVNSTWTYLGRPWKQYSRTIFMQSHISDVLRPEGWLEWNGDFALDTLYYAEYMNYGPGAGLNKRVKWPGYHIMNDSNQASNFTVTQFIEGNLWLPTTGVAFTAGLGV* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5480 525 CDD PMEI-like_4 24 179 - -
Tpr2g5480 525 SUPERFAMILY Pectin lyase-like 210 522 IPR011050 -
Tpr2g5480 525 TIGRFAM PME_inhib: pectinesterase inhibitor domain 84 163 IPR006501 GO:0004857
Tpr2g5480 525 Pfam Plant invertase/pectin methylesterase inhibitor 33 167 IPR006501 GO:0004857
Tpr2g5480 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 180 IPR035513 -
Tpr2g5480 525 Gene3D - 210 525 IPR012334 -
Tpr2g5480 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 162 IPR035513 -
Tpr2g5480 525 SMART PMEI_2 22 178 IPR006501 GO:0004857
Tpr2g5480 525 Pfam Pectinesterase 212 509 IPR000070 GO:0030599|GO:0042545
Tpr2g5480 525 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Tpr2g5480 525 PANTHER PECTINESTERASE 53 181 - -
Tpr2g5480 525 PANTHER PECTINESTERASE 188 523 - -
Tpr2g5480 525 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 188 523 - -
Tpr2g5480 525 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 53 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5480 Tpr-Chr2 62522129 62527654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5480 26 523 Carbohydrate Esterase AT3G43270 62.597 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5480 K01051 - gmx:100777500 804.668