Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5477 ATGATGAATTCCTCAGCAAACAAGTCCATGCCAGCATCTGGAATGAACACAGTGGTTCCTAATACAAGTCAGCTTACCATATTCTATAATGGGAGTATTTGTATCTATGATGGAATACCTGCAGAAAAGGTGCAGGAAATAATGCTCATGGCTGCTGCTGCGGCCAAGTCTACTGAAACGAAGAAGATTGTGAAACAATCTCCCGTCCCTTCACCTGCTCCAACTAGGCCTTCTTCTCCACATGGAACCACTGATAATATTGCTTCACAGCAGGGACTCTGCTATCCTGCACAGAAGAGTTCCATCTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACATTCACTTCAAATGTTTCTTCAGAAGCGGCGAGACAGGTTGGGTAGTAAAGCACCTTATCCTTCCTCCCCAACAACAAAGGTGGCTGACAACATAGAGAACAACTTCTGTTCTGAGAATTCCCCAGATTCGGTTTCAATGAAGGGACCAAAGGAGGAATTGCTGCCAACTATATCTACCTCTTAA 525 0.4476 MMNSSANKSMPASGMNTVVPNTSQLTIFYNGSICIYDGIPAEKVQEIMLMAAAAAKSTETKKIVKQSPVPSPAPTRPSSPHGTTDNIASQQGLCYPAQKSSICRLQEFPIARRHSLQMFLQKRRDRLGSKAPYPSSPTTKVADNIENNFCSENSPDSVSMKGPKEELLPTISTS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5477 174 Pfam Jas motif 109 133 IPR018467 -
Tpr2g5477 174 ProSiteProfiles Tify domain profile. 18 53 IPR010399 -
Tpr2g5477 174 MobiDBLite consensus disorder prediction 132 158 - -
Tpr2g5477 174 PANTHER DIVERGENT CCT MOTIF PROTEIN 4 152 - -
Tpr2g5477 174 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 152 IPR040390 -
Tpr2g5477 174 MobiDBLite consensus disorder prediction 59 91 - -
Tpr2g5477 174 Pfam tify domain 20 52 IPR010399 -
Tpr2g5477 174 SMART tify_2 18 53 IPR010399 -
Tpr2g5477 174 MobiDBLite consensus disorder prediction 127 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5477 Tpr-Chr2 62416907 62420538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5477 17 136 Tify Gene Family AT5G20900 53.719 9.34e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tpr2g5477 tify 4.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5477 K13464 - gmx:100306045 236.884