Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5457 ATGGAAGACAAAGGTTCAACAAAGAAATTTATGGAAGATGATGAAAAGCCATCATATGATGATAACAATATAGATTCACAAATCAAGAAGACCGATGGACCTTCTTCCTCTCATAACAATACTCAAGGATCTACTCTTTTATTAAGTTTGAGCCTTAATAACACAACACAACTTCCGCATCAAATTCAAGCAAAGCCTCAAATTCAAATTGGGAAGCTCCGAGTGAAGCTTGAGGAAGAAAAGAAGGAGAATGAAAATTTGAAAGCAATGTTAAATGTGGTCAACGAACGATGCATTGTTCTTCAAAATCGTTTACTTGTGGCGATGCATATGCATCAAATATCTTCATCGCCTCAAAATAATAACAACTTGCCGAAGGGAAATGGACAAGATGCGGAGAAATCAATGTTACCTACTCGCCAGTTCTTTGACGAACCTTCATCTTCAGATTGTAGCAAAAAAGAAGGATTTCAAAACAATGAAAACAGCATGGGAAGAAACTTTGCATGTGAGAACATTAATGAAGGTGAAATAAATAAAAAAATAGAGGATGAATCATCTGAGGTTAGCTGCAGGAGAGCTAGAGTGTCCATTAGGGCACGATCAGATTTTTCTTTGATGATGGATGGGTGTCAATGGAGAAAGTATGGTCAAAAGACAGCTAAGGGCAACCCTTGTCCACGGGCCTATTATCGTTGTAGTATGGGAACTTCATGTCCAGTTCGTAAGCAGGTACAAAGGTGTTTCAAGGATGAAAGTGTTTTCATCACAACCTATGAAGGGAACCACAATCATCAACTTCCACAAGCAGCAAAACCAATTGCAAACTTAATATCATCAGCACTCAACACATTCTTTACAAACTCATCCACAAGTTTACAATATGGCAACAATCTATCAAACACATTCCTCTTCTCTTCACCATTATCTCCACCAAACTCAAATGCTATAGCTACTTTCTCTCCATCTCCAACATGTCCAATAATTACACTTGATTTTACACTCCCTCCAAGTAATTTCTTGCAATTCAAAAACCACAAACAATCATCATCATTGTTCCCTTTTCCATTGCAAGGTTACCCTCAATCATTTGAGGGTTTTCCAAATATGATAAATAATGAGAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTATAGCTAAAGATCCTTCTCTTAAGGCAACATTATTTGCAGCTATGTCATCATTCACAAATGGATCAGATCCTTTAAATATTAATAACCTTAGCCAACCTAGTAAGAGTGATTAG 1272 0.3703 MEDKGSTKKFMEDDEKPSYDDNNIDSQIKKTDGPSSSHNNTQGSTLLLSLSLNNTTQLPHQIQAKPQIQIGKLRVKLEEEKKENENLKAMLNVVNERCIVLQNRLLVAMHMHQISSSPQNNNNLPKGNGQDAEKSMLPTRQFFDEPSSSDCSKKEGFQNNENSMGRNFACENINEGEINKKIEDESSEVSCRRARVSIRARSDFSLMMDGCQWRKYGQKTAKGNPCPRAYYRCSMGTSCPVRKQVQRCFKDESVFITTYEGNHNHQLPQAAKPIANLISSALNTFFTNSSTSLQYGNNLSNTFLFSSPLSPPNSNAIATFSPSPTCPIITLDFTLPPSNFLQFKNHKQSSSLFPFPLQGYPQSFEGFPNMINNERKLALVDVVSEAIAKDPSLKATLFAAMSSFTNGSDPLNINNLSQPSKSD* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5457 423 SMART WRKY_cls 207 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr2g5457 423 MobiDBLite consensus disorder prediction 1 41 - -
Tpr2g5457 423 Gene3D WRKY domain 191 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr2g5457 423 Coils Coil 70 97 - -
Tpr2g5457 423 ProSiteProfiles WRKY domain profile. 202 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr2g5457 423 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 418 IPR044810 GO:0003700
Tpr2g5457 423 MobiDBLite consensus disorder prediction 1 27 - -
Tpr2g5457 423 Pfam WRKY DNA -binding domain 209 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr2g5457 423 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 22 418 - -
Tpr2g5457 423 SUPERFAMILY WRKY DNA-binding domain 201 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5457 Tpr-Chr2 61703821 61709553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5457 71 334 WRKY Transcription Factor Family AT4G04450 37.778 1.04e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr2g5457 WRKY 7.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5457 - - cam:101498660 548.895