Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g5434 ATGACTCTGCACATAAAACAGTTTCTACTGATTGCGGTTGTTGCTGTTCTTTATACAAAAGCATCAACTCAACCAATATCACTACCAAACTGCCCATCAAAGTGTGGTTGTGTCACCATTCCCTACCCATTTGGAACCACCAAAGATTGTTCCCTAGACAACACCTTTCTCATCAATTGCAGCCAAACTTCACACGTACCATTCTTCCAAGAGGAAGCTGATAATTATGATTCTGATTCTGATTATTATAATATAAGTGTTCTAAACATCTCATTGGATGGTGTGCTGCGTGTTGCATGGCCAATATCCAGCGATTGCTACGATGAAAAGGGTAAACTTGTGAACGAAACAACTCCGGATATCACACTGACATATTTTGACATCTCGTCAAGTCAAAACAAGTTTATAGCAGTTGGTTGTGACACATTGGGAATATTCACAGCATTTGATTCTGGGGGAAAAGTCTATGCCACAGGATGTGTGGCTTACTGCAACAACCTTAATGATACTGAGGCCAATAAATGTTCAGGCATTGGCTGTTGCGAGATTTCAATGCCCCAAGGTCACTTGTTTGCAGAAGTAAACTATGGTTCTAAGAACATATCAGACGATAATCACAAATCAGTACATGGCTTCAATCCATGTGGTTATGCGTTCATCAATGAACTGGTTATTCTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTTTTTGGCTTTTGTTTGGAGACAGAAGTTCTCTTGCTTGTTTATGAATTCATTCCCAATGGCACAGTTCATGAGCATTTGCATGGCTCCGTCACTGATTTGCATGATAAAAACCAATCTATAAAGCTAACATGGAAAACAAGATTAAGAATAGCAAAAGAAACCGCTGGTGTCCTGGCATACTTACATTCCGCCGCTTCTACACCTATCATACATAGAGACGTGAAATCTAGAAATATACTCCTAGATCGCAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATTGTACCTCTTGATCATAGTCAGATAAACACTCTAGTGCAGGGGACATTGGGGTATCTTGACCCAGAATACCTCCACACAAGCCAGTTAACAGAGAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTAGCAGAGTTGCTGACAGGAAAGAAGGCACTATCTTTTGACAGGCCAGAGGTTGAAAGAAACCTTGCTTCATACTTTGGTTCTTCAATGAAAGAGGGTCGGTTACTTCATATTTTGGACCAAAATATAGATGAAGCAAATATTGAGCAAGTAAAAGAGGGTGCCCATATTGCAGAACGCTGTTTAAGGGTGAAGGGCGAGGATAGACCCACCATGAAAGAAGTAGCAATGGAACTAGAAGGAATATTAGTTATTGAAGAGCATCGTTGGGGAAGTGACAATTTGTCTTCAGAAGAGACTGAAAACTTGATAGGAATGAAGGCATTATCTTTTGACAGGCCAGAGGTTGATAGAAACCTTGCTGCATACTTTGGTTCTTCGATGAAAGCGGGTCGGTTACTTCATATTTTGGACAAAAGTATAGACATGGCAAATATTGAGCAACTAGAAGAGGCTGCCCAAATTGCAGAGTGA 1599 0.404 MTLHIKQFLLIAVVAVLYTKASTQPISLPNCPSKCGCVTIPYPFGTTKDCSLDNTFLINCSQTSHVPFFQEEADNYDSDSDYYNISVLNISLDGVLRVAWPISSDCYDEKGKLVNETTPDITLTYFDISSSQNKFIAVGCDTLGIFTAFDSGGKVYATGCVAYCNNLNDTEANKCSGIGCCEISMPQGHLFAEVNYGSKNISDDNHKSVHGFNPCGYAFINELVILSQINHRNVVKLFGFCLETEVLLLVYEFIPNGTVHEHLHGSVTDLHDKNQSIKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSRNILLDRNLTAKVSDFGASRIVPLDHSQINTLVQGTLGYLDPEYLHTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEVERNLASYFGSSMKEGRLLHILDQNIDEANIEQVKEGAHIAERCLRVKGEDRPTMKEVAMELEGILVIEEHRWGSDNLSSEETENLIGMKALSFDRPEVDRNLAAYFGSSMKAGRLLHILDKSIDMANIEQLEEAAQIAE* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g5434 532 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 476 531 IPR045274 GO:0007166
Tpr2g5434 532 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 200 IPR045274 GO:0007166
Tpr2g5434 532 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 219 474 IPR045274 GO:0007166
Tpr2g5434 532 SMART serkin_6 185 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g5434 532 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 219 474 - -
Tpr2g5434 532 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 476 531 - -
Tpr2g5434 532 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 20 200 - -
Tpr2g5434 532 SUPERFAMILY Protein kinase-like (PK-like) 218 454 IPR011009 -
Tpr2g5434 532 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Tpr2g5434 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Tpr2g5434 532 Pfam Protein kinase domain 211 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g5434 532 Coils Coil 514 532 - -
Tpr2g5434 532 ProSiteProfiles Protein kinase domain profile. 170 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g5434 532 Gene3D Transferase(Phosphotransferase) domain 1 258 474 - -
Tpr2g5434 532 Gene3D Phosphorylase Kinase; domain 1 188 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g5434 Tpr-Chr2 61262347 61264690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g5434 476 531 Receptor kinase-like Gene Family AT1G21240 40.351 7.24e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tpr2g5434 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g5434 - - vvi:100252247 442.58